Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KDN entry

There are 3 chains in PDB entry 7KDN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	LEU 638
B	ASP 21	PHE 616
C	GLU 16	ARG 135

There are130 helices in PDB entry 7KDN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	26	32	Right-handed alpha
Helix 3	AA3	A	41	55	Right-handed alpha
Helix 4	AA4	A	55	68	Right-handed alpha
Helix 5	AA5	A	96	102	Right-handed alpha
Helix 6	AA6	A	102	109	Right-handed alpha
Helix 7	AA7	A	130	146	Right-handed alpha
Helix 8	AA8	A	162	175	Right-handed alpha
Helix 9	AA9	A	187	199	Right-handed alpha
Helix 10	AB1	A	217	227	Right-handed alpha
Helix 11	AB2	A	255	260	Right-handed alpha
Helix 12	AB3	A	296	310	Right-handed alpha
Helix 13	AB4	A	327	334	Right-handed alpha
Helix 14	AB5	A	335	342	Right-handed alpha
Helix 15	AB6	A	358	368	Right-handed alpha
Helix 16	AB7	A	375	386	Right-handed alpha
Helix 17	AB8	A	408	418	Right-handed alpha
Helix 18	AB9	A	432	436	Right-handed 310
Helix 19	AC1	A	499	508	Right-handed alpha
Helix 20	AC2	A	548	557	Right-handed alpha
Helix 21	AC3	A	590	606	Right-handed alpha
Helix 22	AC4	A	607	611	Right-handed 310
Helix 23	AC5	A	630	638	Right-handed alpha
Helix 24	AC6	B	26	32	Right-handed alpha
Helix 25	AC7	B	41	55	Right-handed alpha
Helix 26	AC8	B	55	68	Right-handed alpha
Helix 27	AC9	B	96	102	Right-handed alpha
Helix 28	AD1	B	102	109	Right-handed alpha
Helix 29	AD2	B	130	146	Right-handed alpha
Helix 30	AD3	B	162	175	Right-handed alpha
Helix 31	AD4	B	187	199	Right-handed alpha
Helix 32	AD5	B	217	227	Right-handed alpha
Helix 33	AD6	B	255	260	Right-handed alpha
Helix 34	AD7	B	296	310	Right-handed alpha
Helix 35	AD8	B	327	334	Right-handed alpha
Helix 36	AD9	B	335	342	Right-handed alpha
Helix 37	AE1	B	358	367	Right-handed alpha
Helix 38	AE2	B	375	386	Right-handed alpha
Helix 39	AE3	B	387	390	Right-handed 310
Helix 40	AE4	B	408	418	Right-handed alpha
Helix 41	AE5	B	432	436	Right-handed 310
Helix 42	AE6	B	499	508	Right-handed alpha
Helix 43	AE7	B	548	558	Right-handed alpha
Helix 44	AE8	B	597	606	Right-handed alpha
Helix 45	AE9	B	607	611	Right-handed 310
Helix 46	AF1	C	26	32	Right-handed alpha
Helix 47	AF2	C	41	55	Right-handed alpha
Helix 48	AF3	C	55	68	Right-handed alpha
Helix 49	AF4	C	96	102	Right-handed alpha
Helix 50	AF5	C	102	109	Right-handed alpha
Helix 51	AF6	C	130	147	Right-handed alpha
Helix 52	AF7	C	162	176	Right-handed alpha
Helix 53	AF8	C	187	199	Right-handed alpha
Helix 54	AF9	C	217	227	Right-handed alpha
Helix 55	AG1	C	255	260	Right-handed alpha
Helix 56	AG2	C	296	310	Right-handed alpha
Helix 57	AG3	C	327	334	Right-handed alpha
Helix 58	AG4	C	335	342	Right-handed alpha
Helix 59	AG5	C	358	368	Right-handed alpha
Helix 60	AG6	C	375	385	Right-handed alpha
Helix 61	AG7	C	386	390	Right-handed 310
Helix 62	AG8	C	408	418	Right-handed alpha
Helix 63	AG9	C	432	436	Right-handed 310
Helix 64	AH1	C	499	508	Right-handed alpha
Helix 65	AH2	D	26	32	Right-handed alpha
Helix 66	AH3	D	41	55	Right-handed alpha
Helix 67	AH4	D	55	68	Right-handed alpha
Helix 68	AH5	D	96	102	Right-handed alpha
Helix 69	AH6	D	102	109	Right-handed alpha
Helix 70	AH7	D	130	146	Right-handed alpha
Helix 71	AH8	D	162	175	Right-handed alpha
Helix 72	AH9	D	187	199	Right-handed alpha
Helix 73	AI1	D	217	227	Right-handed alpha
Helix 74	AI2	D	255	260	Right-handed alpha
Helix 75	AI3	D	296	310	Right-handed alpha
Helix 76	AI4	D	327	334	Right-handed alpha
Helix 77	AI5	D	335	342	Right-handed alpha
Helix 78	AI6	D	358	367	Right-handed alpha
Helix 79	AI7	D	375	386	Right-handed alpha
Helix 80	AI8	D	387	390	Right-handed 310
Helix 81	AI9	D	408	418	Right-handed alpha
Helix 82	AJ1	D	432	436	Right-handed 310
Helix 83	AJ2	D	499	508	Right-handed alpha
Helix 84	AJ3	D	548	557	Right-handed alpha
Helix 85	AJ4	D	595	606	Right-handed alpha
Helix 86	AJ5	D	630	638	Right-handed alpha
Helix 87	AJ6	E	26	32	Right-handed alpha
Helix 88	AJ7	E	41	55	Right-handed alpha
Helix 89	AJ8	E	55	68	Right-handed alpha
Helix 90	AJ9	E	96	102	Right-handed alpha
Helix 91	AK1	E	102	109	Right-handed alpha
Helix 92	AK2	E	130	146	Right-handed alpha
Helix 93	AK3	E	162	175	Right-handed alpha
Helix 94	AK4	E	187	199	Right-handed alpha
Helix 95	AK5	E	217	227	Right-handed alpha
Helix 96	AK6	E	255	260	Right-handed alpha
Helix 97	AK7	E	296	310	Right-handed alpha
Helix 98	AK8	E	327	334	Right-handed alpha
Helix 99	AK9	E	335	342	Right-handed alpha
Helix 100	AL1	E	358	367	Right-handed alpha
Helix 101	AL2	E	375	386	Right-handed alpha
Helix 102	AL3	E	387	390	Right-handed 310
Helix 103	AL4	E	408	418	Right-handed alpha
Helix 104	AL5	E	432	436	Right-handed 310
Helix 105	AL6	E	499	508	Right-handed alpha
Helix 106	AL7	E	548	558	Right-handed alpha
Helix 107	AL8	E	596	606	Right-handed alpha
Helix 108	AL9	E	607	611	Right-handed 310
Helix 109	AM1	E	632	638	Right-handed alpha
Helix 110	AM2	F	26	32	Right-handed alpha
Helix 111	AM3	F	41	55	Right-handed alpha
Helix 112	AM4	F	55	68	Right-handed alpha
Helix 113	AM5	F	96	102	Right-handed alpha
Helix 114	AM6	F	102	109	Right-handed alpha
Helix 115	AM7	F	130	146	Right-handed alpha
Helix 116	AM8	F	162	175	Right-handed alpha
Helix 117	AM9	F	187	199	Right-handed alpha
Helix 118	AN1	F	217	227	Right-handed alpha
Helix 119	AN2	F	255	260	Right-handed alpha
Helix 120	AN3	F	296	310	Right-handed alpha
Helix 121	AN4	F	327	334	Right-handed alpha
Helix 122	AN5	F	335	342	Right-handed alpha
Helix 123	AN6	F	358	367	Right-handed alpha
Helix 124	AN7	F	375	386	Right-handed alpha
Helix 125	AN8	F	387	390	Right-handed 310
Helix 126	AN9	F	408	418	Right-handed alpha
Helix 127	AO1	F	499	508	Right-handed alpha
Helix 128	AO2	F	548	558	Right-handed alpha
Helix 129	AO3	F	595	606	Right-handed alpha
Helix 130	AO4	F	633	638	Right-handed alpha

There are 46 sheets in PDB entry 7KDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	88	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	271	272	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	113	118	anti-parallel
Strand 3	A	344	348	parallel
Strand 4	A	318	321	parallel
Strand 5	A	371	374	parallel
Strand 6	A	399	402	parallel
Strand 7	A	425	428	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	234	238	parallel
Strand 3	A	202	206	parallel
Strand 4	A	154	158	parallel
Strand 5	A	178	181	parallel
Strand 6	A	276	282	parallel
Strand 7	A	290	295	anti-parallel
Strand 8	A	495	496	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	214	216	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	463	466	anti-parallel
Strand 3	A	479	485	anti-parallel
Strand 4	A	515	523	anti-parallel
Strand 5	A	529	534	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	544	547	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	571	first strand
Strand 2	A	575	584	anti-parallel
Strand 3	A	614	617	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	88	89	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	271	272	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	113	118	anti-parallel
Strand 3	B	344	348	parallel
Strand 4	B	318	321	parallel
Strand 5	B	371	374	parallel
Strand 6	B	399	402	parallel
Strand 7	B	425	428	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	234	238	parallel
Strand 3	B	202	206	parallel
Strand 4	B	154	158	parallel
Strand 5	B	178	181	parallel
Strand 6	B	276	282	parallel
Strand 7	B	290	295	anti-parallel
Strand 8	B	495	496	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	214	216	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	463	466	anti-parallel
Strand 3	B	479	485	anti-parallel
Strand 4	B	515	523	anti-parallel
Strand 5	B	529	534	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	544	547	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	566	first strand
Strand 2	B	579	583	anti-parallel
Strand 3	B	614	616	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	88	89	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	271	272	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	113	118	anti-parallel
Strand 3	C	344	348	parallel
Strand 4	C	318	321	parallel
Strand 5	C	371	374	parallel
Strand 6	C	399	402	parallel
Strand 7	C	425	428	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	234	238	parallel
Strand 3	C	202	206	parallel
Strand 4	C	154	158	parallel
Strand 5	C	178	181	parallel
Strand 6	C	276	282	parallel
Strand 7	C	290	295	anti-parallel
Strand 8	C	495	496	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	214	216	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	466	first strand
Strand 2	C	479	485	anti-parallel
Strand 3	C	515	523	anti-parallel
Strand 4	C	529	534	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	88	89	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	271	272	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	344	348	parallel
Strand 4	D	318	321	parallel
Strand 5	D	371	374	parallel
Strand 6	D	399	402	parallel
Strand 7	D	425	428	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	234	238	parallel
Strand 3	D	202	206	parallel
Strand 4	D	154	158	parallel
Strand 5	D	178	181	parallel
Strand 6	D	276	282	parallel
Strand 7	D	290	295	anti-parallel
Strand 8	D	495	496	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	214	216	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	463	466	anti-parallel
Strand 3	D	479	485	anti-parallel
Strand 4	D	515	523	anti-parallel
Strand 5	D	529	534	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	544	547	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	567	first strand
Strand 2	D	579	583	anti-parallel
Strand 3	D	614	617	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	88	89	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	271	272	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	129	first strand
Strand 2	E	113	118	anti-parallel
Strand 3	E	344	348	parallel
Strand 4	E	318	321	parallel
Strand 5	E	371	374	parallel
Strand 6	E	399	402	parallel
Strand 7	E	425	428	parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	234	238	parallel
Strand 3	E	202	206	parallel
Strand 4	E	154	158	parallel
Strand 5	E	178	181	parallel
Strand 6	E	276	282	parallel
Strand 7	E	290	295	anti-parallel
Strand 8	E	495	496	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	211	first strand
Strand 2	E	214	216	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	463	466	anti-parallel
Strand 3	E	479	485	anti-parallel
Strand 4	E	515	523	anti-parallel
Strand 5	E	529	534	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	541	first strand
Strand 2	E	544	547	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	563	571	first strand
Strand 2	E	575	583	anti-parallel
Strand 3	E	614	617	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	88	89	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	271	272	anti-parallel

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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	129	first strand
Strand 2	F	113	118	anti-parallel
Strand 3	F	344	348	parallel
Strand 4	F	318	321	parallel
Strand 5	F	371	374	parallel
Strand 6	F	399	402	parallel
Strand 7	F	425	428	parallel

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There are 8 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	254	first strand
Strand 2	F	234	238	parallel
Strand 3	F	202	206	parallel
Strand 4	F	154	158	parallel
Strand 5	F	178	181	parallel
Strand 6	F	276	282	parallel
Strand 7	F	290	295	anti-parallel
Strand 8	F	495	496	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	211	first strand
Strand 2	F	214	216	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	463	466	anti-parallel
Strand 3	F	479	485	anti-parallel
Strand 4	F	515	523	anti-parallel
Strand 5	F	529	534	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	541	first strand
Strand 2	F	544	547	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	561	566	first strand
Strand 2	F	579	584	anti-parallel
Strand 3	F	614	617	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KDN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDN