Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KDP entry

There are 3 chains in PDB entry 7KDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 86	TYR 769
B	THR 86	TYR 769
C	THR 86	TYR 769

There are 36 helices in PDB entry 7KDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	183	Right-handed alpha
Helix 2	AA2	A	391	408	Right-handed alpha
Helix 3	AA3	A	484	521	Right-handed alpha
Helix 4	AA4	A	524	534	Right-handed alpha
Helix 5	AA5	A	646	649	Right-handed 310
Helix 6	AA6	A	660	668	Right-handed alpha
Helix 7	AA7	A	681	686	Right-handed alpha
Helix 8	AA8	A	689	703	Right-handed alpha
Helix 9	AA9	A	709	711	Right-handed 310
Helix 10	AB1	A	712	722	Right-handed alpha
Helix 11	AB2	A	725	750	Right-handed alpha
Helix 12	AB3	A	750	769	Right-handed alpha
Helix 13	AB4	B	172	183	Right-handed alpha
Helix 14	AB5	B	391	408	Right-handed alpha
Helix 15	AB6	B	484	521	Right-handed alpha
Helix 16	AB7	B	524	534	Right-handed alpha
Helix 17	AB8	B	646	649	Right-handed 310
Helix 18	AB9	B	660	668	Right-handed alpha
Helix 19	AC1	B	681	686	Right-handed alpha
Helix 20	AC2	B	689	703	Right-handed alpha
Helix 21	AC3	B	709	711	Right-handed 310
Helix 22	AC4	B	712	722	Right-handed alpha
Helix 23	AC5	B	725	750	Right-handed alpha
Helix 24	AC6	B	750	769	Right-handed alpha
Helix 25	AC7	C	172	183	Right-handed alpha
Helix 26	AC8	C	391	408	Right-handed alpha
Helix 27	AC9	C	484	521	Right-handed alpha
Helix 28	AD1	C	524	534	Right-handed alpha
Helix 29	AD2	C	646	649	Right-handed 310
Helix 30	AD3	C	660	668	Right-handed alpha
Helix 31	AD4	C	681	686	Right-handed alpha
Helix 32	AD5	C	689	703	Right-handed alpha
Helix 33	AD6	C	709	711	Right-handed 310
Helix 34	AD7	C	712	722	Right-handed alpha
Helix 35	AD8	C	725	750	Right-handed alpha
Helix 36	AD9	C	750	769	Right-handed alpha

There are 27 sheets in PDB entry 7KDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	546	549	anti-parallel
Strand 3	A	102	104	anti-parallel
Strand 4	B	643	644	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	428	435	anti-parallel
Strand 4	A	413	422	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	258	259	anti-parallel
Strand 3	A	266	267	anti-parallel
Strand 4	A	273	274	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	169	first strand
Strand 2	A	141	154	anti-parallel
Strand 3	A	249	254	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	141	154	anti-parallel
Strand 3	A	331	335	anti-parallel
Strand 4	A	316	324	anti-parallel
Strand 5	A	298	306	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	210	212	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	579	581	anti-parallel
Strand 3	A	593	595	anti-parallel
Strand 4	A	601	603	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	608	610	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	620	first strand
Strand 2	A	624	629	anti-parallel
Strand 3	A	635	638	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	644	first strand
Strand 2	C	102	104	parallel
Strand 3	C	546	549	anti-parallel
Strand 4	C	538	541	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	546	549	anti-parallel
Strand 3	B	102	104	anti-parallel
Strand 4	C	643	644	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	428	435	anti-parallel
Strand 4	B	413	422	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	258	259	anti-parallel
Strand 3	B	266	267	anti-parallel
Strand 4	B	273	274	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	169	first strand
Strand 2	B	141	154	anti-parallel
Strand 3	B	249	254	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	141	154	anti-parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	316	324	anti-parallel
Strand 5	B	298	306	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	210	212	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	579	581	anti-parallel
Strand 3	B	593	595	anti-parallel
Strand 4	B	601	603	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	608	610	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	620	first strand
Strand 2	B	624	629	anti-parallel
Strand 3	B	635	638	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	124	128	anti-parallel
Strand 3	C	428	435	anti-parallel
Strand 4	C	413	422	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	258	259	anti-parallel
Strand 3	C	266	267	anti-parallel
Strand 4	C	273	274	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	169	first strand
Strand 2	C	141	154	anti-parallel
Strand 3	C	249	254	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	141	154	anti-parallel
Strand 3	C	331	335	anti-parallel
Strand 4	C	316	324	anti-parallel
Strand 5	C	298	306	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	210	212	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	561	first strand
Strand 2	C	579	581	anti-parallel
Strand 3	C	593	595	anti-parallel
Strand 4	C	601	603	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	C	608	610	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	620	first strand
Strand 2	C	624	629	anti-parallel
Strand 3	C	635	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDP