Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KDS entry

There is 1 chain in PDB entry 7KDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20PHE 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7KDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 44Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
107 113Right-handed alpha
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
141 159Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
198 210Right-handed alpha
Helix 10
AB1
A
229 238Right-handed alpha
Helix 11
AB2
A
267 272Right-handed alpha
Helix 12
AB3
A
308 322Right-handed alpha
Helix 13
AB4
A
339 346Right-handed alpha
Helix 14
AB5
A
347 353Right-handed alpha
Helix 15
AB6
A
370 379Right-handed alpha
Helix 16
AB7
A
387 398Right-handed alpha
Helix 17
AB8
A
399 404Right-handed 310
Helix 18
AB9
A
421 432Right-handed alpha
Helix 19
AC1
A
512 521Right-handed alpha
Helix 20
AC2
A
561 570Right-handed alpha
Helix 21
AC3
A
605 621Right-handed alpha
Helix 22
AC4
A
622 626Right-handed 310
Helix 23
AC5
A
645 654Right-handed alpha
Helix 24
AC6
A
669 683Right-handed alpha
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There are 8 sheets in PDB entry 7KDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
283 284anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
357 360parallel
Strand 4
A
331 333parallel
Strand 5
A
383 386parallel
Strand 6
A
412 416parallel
Strand 7
A
438 442parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
245 249parallel
Strand 3
A
213 217parallel
Strand 4
A
165 169parallel
Strand 5
A
189 192parallel
Strand 6
A
288 294parallel
Strand 7
A
302 307anti-parallel
Strand 8
A
508 509anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
225 228anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
476 479anti-parallel
Strand 3
A
492 498anti-parallel
Strand 4
A
528 536anti-parallel
Strand 5
A
542 547anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 554first strand
Strand 2
A
557 560anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 582first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
630 632parallel
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