Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KDT entry

There are 2 chains in PDB entry 7KDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 109LYS 600
B
 PRO 39VAL 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 7KDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 127Right-handed alpha
Helix 2
AA2
A
129 144Right-handed alpha
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
A
152 166Right-handed alpha
Helix 5
AA5
A
168 183Right-handed alpha
Helix 6
AA6
A
186 200Right-handed alpha
Helix 7
AA7
A
202 217Right-handed alpha
Helix 8
AA8
A
221 245Right-handed alpha
Helix 9
AA9
A
253 262Right-handed alpha
Helix 10
AB1
A
299 307Right-handed alpha
Helix 11
AB2
A
309 311Right-handed 310
Helix 12
AB3
A
312 321Right-handed alpha
Helix 13
AB4
A
324 343Right-handed alpha
Helix 14
AB5
A
344 358Right-handed alpha
Helix 15
AB6
A
362 380Right-handed alpha
Helix 16
AB7
A
382 397Right-handed alpha
Helix 17
AB8
A
400 414Right-handed alpha
Helix 18
AB9
A
416 431Right-handed alpha
Helix 19
AC1
A
434 452Right-handed alpha
Helix 20
AC2
A
454 472Right-handed alpha
Helix 21
AC3
A
475 489Right-handed alpha
Helix 22
AC4
A
491 506Right-handed alpha
Helix 23
AC5
A
509 521Right-handed alpha
Helix 24
AC6
A
526 541Right-handed alpha
Helix 25
AC7
A
544 558Right-handed alpha
Helix 26
AC8
A
560 573Right-handed alpha
Helix 27
AC9
A
577 599Right-handed alpha
Helix 28
AD1
B
51 69Right-handed alpha
Helix 29
AD2
B
72 76Right-handed 310
Back to top of page
There are no sheets in PDB entry 7KDT
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il