Analysis of interatomic Contacts of Structural Units in PDB entry:
7KED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KED entry

There is 1 chain in PDB entry 7KED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLU 1337

There are123 helices in PDB entry 7KED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	95	105	Right-handed alpha
Helix 4	AA4	A	119	127	Right-handed alpha
Helix 5	AA5	A	130	141	Right-handed alpha
Helix 6	AA6	A	203	213	Right-handed alpha
Helix 7	AA7	A	215	223	Right-handed alpha
Helix 8	AA8	A	230	234	Right-handed 310
Helix 9	AA9	A	243	247	Right-handed 310
Helix 10	AB1	A	260	281	Right-handed alpha
Helix 11	AB2	A	285	305	Right-handed alpha
Helix 12	AB3	A	316	320	Right-handed 310
Helix 13	AB4	A	324	330	Right-handed alpha
Helix 14	AB5	A	335	340	Right-handed alpha
Helix 15	AB6	A	367	374	Right-handed alpha
Helix 16	AB7	A	384	394	Right-handed alpha
Helix 17	AB8	A	451	453	Right-handed 310
Helix 18	AB9	A	471	475	Right-handed 310
Helix 19	AC1	A	494	504	Right-handed alpha
Helix 20	AC2	A	507	510	Right-handed 310
Helix 21	AC3	A	514	517	Right-handed 310
Helix 22	AC4	A	524	536	Right-handed alpha
Helix 23	AC5	A	542	553	Right-handed alpha
Helix 24	AC6	A	574	579	Right-handed alpha
Helix 25	AC7	A	618	623	Right-handed alpha
Helix 26	AC8	A	628	637	Right-handed alpha
Helix 27	AC9	A	638	661	Right-handed alpha
Helix 28	AD1	A	666	670	Right-handed 310
Helix 29	AD2	A	672	698	Right-handed alpha
Helix 30	AD3	A	709	737	Right-handed alpha
Helix 31	AD4	A	741	750	Right-handed alpha
Helix 32	AD5	A	755	763	Right-handed alpha
Helix 33	AD6	A	809	846	Right-handed alpha
Helix 34	AD7	A	867	871	Right-handed 310
Helix 35	AD8	A	889	898	Right-handed alpha
Helix 36	AD9	A	909	913	Right-handed 310
Helix 37	AE1	A	915	920	Right-handed alpha
Helix 38	AE2	A	922	947	Right-handed alpha
Helix 39	AE3	A	959	971	Right-handed alpha
Helix 40	AE4	A	982	995	Right-handed alpha
Helix 41	AE5	A	1004	1015	Right-handed alpha
Helix 42	AE6	A	1015	1026	Right-handed alpha
Helix 43	AE7	A	1027	1035	Right-handed alpha
Helix 44	AE8	A	1038	1057	Right-handed alpha
Helix 45	AE9	A	1063	1078	Right-handed alpha
Helix 46	AF1	A	1097	1106	Right-handed alpha
Helix 47	AF2	A	1127	1137	Right-handed alpha
Helix 48	AF3	A	1142	1145	Right-handed 310
Helix 49	AF4	A	1163	1165	Right-handed 310
Helix 50	AF5	A	1166	1172	Right-handed alpha
Helix 51	AF6	A	1198	1205	Right-handed alpha
Helix 52	AF7	A	1208	1221	Right-handed alpha
Helix 53	AF8	A	1258	1271	Right-handed alpha
Helix 54	AF9	A	1312	1317	Right-handed alpha
Helix 55	AG1	A	1331	1339	Right-handed alpha
Helix 56	AG2	A	1341	1358	Right-handed alpha
Helix 57	AG3	A	1364	1376	Right-handed alpha
Helix 58	AG4	A	1398	1402	Right-handed 310
Helix 59	AG5	A	1404	1415	Right-handed alpha
Helix 60	AG6	A	1423	1430	Right-handed alpha
Helix 61	AG7	A	1436	1439	Right-handed 310
Helix 62	AG8	B	29	41	Right-handed alpha
Helix 63	AG9	B	44	57	Right-handed alpha
Helix 64	AH1	B	57	65	Right-handed alpha
Helix 65	AH2	B	113	120	Right-handed alpha
Helix 66	AH3	B	179	183	Right-handed 310
Helix 67	AH4	B	185	192	Right-handed alpha
Helix 68	AH5	B	282	289	Right-handed alpha
Helix 69	AH6	B	293	302	Right-handed alpha
Helix 70	AH7	B	307	321	Right-handed alpha
Helix 71	AH8	B	326	333	Right-handed alpha
Helix 72	AH9	B	346	359	Right-handed alpha
Helix 73	AI1	B	370	388	Right-handed alpha
Helix 74	AI2	B	400	402	Right-handed 310
Helix 75	AI3	B	408	435	Right-handed alpha
Helix 76	AI4	B	450	464	Right-handed alpha
Helix 77	AI5	B	487	496	Right-handed alpha
Helix 78	AI6	B	515	519	Right-handed 310
Helix 79	AI7	B	551	561	Right-handed alpha
Helix 80	AI8	B	592	606	Right-handed alpha
Helix 81	AI9	B	654	667	Right-handed alpha
Helix 82	AJ1	B	680	686	Right-handed alpha
Helix 83	AJ2	B	696	700	Right-handed 310
Helix 84	AJ3	B	706	710	Right-handed 310
Helix 85	AJ4	B	744	749	Right-handed 310
Helix 86	AJ5	B	758	762	Right-handed 310
Helix 87	AJ6	B	763	775	Right-handed alpha
Helix 88	AJ7	B	808	813	Right-handed alpha
Helix 89	AJ8	B	843	849	Right-handed alpha
Helix 90	AJ9	B	1022	1039	Right-handed alpha
Helix 91	AK1	B	1051	1062	Right-handed alpha
Helix 92	AK2	B	1098	1102	Right-handed 310
Helix 93	AK3	B	1121	1125	Right-handed 310
Helix 94	AK4	B	1131	1142	Right-handed alpha
Helix 95	AK5	B	1143	1152	Right-handed alpha
Helix 96	AK6	B	1198	1210	Right-handed alpha
Helix 97	AK7	C	26	40	Right-handed alpha
Helix 98	AK8	C	59	69	Right-handed alpha
Helix 99	AK9	C	76	80	Right-handed 310
Helix 100	AL1	C	167	171	Right-handed 310
Helix 101	AL2	C	196	201	Right-handed alpha
Helix 102	AL3	C	204	210	Right-handed 310
Helix 103	AL4	C	239	266	Right-handed alpha
Helix 104	AL5	E	6	26	Right-handed alpha
Helix 105	AL6	E	31	36	Right-handed alpha
Helix 106	AL7	E	38	46	Right-handed alpha
Helix 107	AL8	E	65	72	Right-handed alpha
Helix 108	AL9	E	89	104	Right-handed alpha
Helix 109	AM1	E	117	122	Right-handed alpha
Helix 110	AM2	E	136	140	Right-handed 310
Helix 111	AM3	E	158	168	Right-handed alpha
Helix 112	AM4	E	182	189	Right-handed alpha
Helix 113	AM5	F	86	103	Right-handed alpha
Helix 114	AM6	F	116	127	Right-handed alpha
Helix 115	AM7	I	59	64	Right-handed 310
Helix 116	AM8	J	14	16	Right-handed 310
Helix 117	AM9	J	17	27	Right-handed alpha
Helix 118	AN1	J	31	38	Right-handed alpha
Helix 119	AN2	J	43	52	Right-handed alpha
Helix 120	AN3	J	56	63	Right-handed alpha
Helix 121	AN4	K	5	10	Right-handed 310
Helix 122	AN5	K	39	53	Right-handed alpha
Helix 123	AN6	K	82	112	Right-handed alpha

There are 41 sheets in PDB entry 7KED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	B	1215	1217	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	90	first strand
Strand 2	A	236	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	181	183	anti-parallel
Strand 3	A	200	201	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	455	462	anti-parallel
Strand 6	A	363	366	parallel
Strand 7	A	468	470	anti-parallel
Strand 8	A	348	355	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	413	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	572	573	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1286	first strand
Strand 2	A	1304	1308	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1236	1242	anti-parallel
Strand 3	A	1193	1197	anti-parallel
Strand 4	A	1147	1152	anti-parallel
Strand 5	I	44	45	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1289	1292	first strand
Strand 2	A	1298	1301	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1441	1445	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	F	143	147	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	87	97	anti-parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	164	171	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	109	111	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	269	271	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	642	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	651	first strand
Strand 2	B	633	642	anti-parallel
Strand 3	B	740	741	anti-parallel
Strand 4	B	703	704	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	586	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	616	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	L	56	58	anti-parallel
Strand 6	L	29	31	anti-parallel
Strand 7	L	37	38	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	981	first strand
Strand 2	B	1085	1094	anti-parallel
Strand 3	B	821	827	anti-parallel
Strand 4	B	1010	1012	parallel
Strand 5	B	839	842	anti-parallel
Strand 6	B	990	994	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	981	first strand
Strand 2	B	1085	1094	anti-parallel
Strand 3	B	1069	1070	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	874	first strand
Strand 2	B	914	916	anti-parallel
Strand 3	B	935	936	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1163	first strand
Strand 2	B	1191	1197	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1172	1174	first strand
Strand 2	B	1179	1181	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	54	first strand
Strand 2	C	152	162	anti-parallel
Strand 3	C	96	104	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	145	147	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	107	110	parallel
Strand 3	E	132	134	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	196	201	anti-parallel
Strand 3	E	207	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 9 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	98	first strand
Strand 2	H	141	145	anti-parallel
Strand 3	H	54	60	anti-parallel
Strand 4	H	6	16	anti-parallel
Strand 5	H	23	30	anti-parallel
Strand 6	H	37	43	anti-parallel
Strand 7	H	121	127	anti-parallel
Strand 8	H	111	118	anti-parallel
Strand 9	H	100	108	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	19	first strand
Strand 2	I	24	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	87	first strand
Strand 2	I	99	103	anti-parallel
Strand 3	I	109	111	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	72	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KED

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KED