Analysis of interatomic Contacts of Structural Units in PDB entry:
7KF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KF5 entry

There are 3 chains in PDB entry 7KF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	LEU 1040
B	ILE 5	LEU 1040
C	ILE 5	LEU 1040

There are114 helices in PDB entry 7KF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	12	33	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	65	74	Right-handed alpha
Helix 5	AA5	A	102	119	Right-handed alpha
Helix 6	AA6	A	134	136	Right-handed 310
Helix 7	AA7	A	152	168	Right-handed alpha
Helix 8	AA8	A	192	200	Right-handed alpha
Helix 9	AA9	A	202	211	Right-handed alpha
Helix 10	AB1	A	296	311	Right-handed alpha
Helix 11	AB2	A	327	358	Right-handed alpha
Helix 12	AB3	A	359	368	Right-handed alpha
Helix 13	AB4	A	368	385	Right-handed alpha
Helix 14	AB5	A	389	425	Right-handed alpha
Helix 15	AB6	A	431	462	Right-handed alpha
Helix 16	AB7	A	463	467	Right-handed 310
Helix 17	AB8	A	469	496	Right-handed alpha
Helix 18	AB9	A	496	504	Right-handed alpha
Helix 19	AC1	A	517	535	Right-handed alpha
Helix 20	AC2	A	535	549	Right-handed alpha
Helix 21	AC3	A	550	557	Right-handed alpha
Helix 22	AC4	A	581	597	Right-handed alpha
Helix 23	AC5	A	641	653	Right-handed alpha
Helix 24	AC6	A	664	675	Right-handed alpha
Helix 25	AC7	A	689	705	Right-handed alpha
Helix 26	AC8	A	729	736	Right-handed alpha
Helix 27	AC9	A	739	749	Right-handed alpha
Helix 28	AD1	A	773	777	Right-handed 310
Helix 29	AD2	A	779	784	Right-handed alpha
Helix 30	AD3	A	832	847	Right-handed alpha
Helix 31	AD4	A	861	892	Right-handed alpha
Helix 32	AD5	A	893	902	Right-handed alpha
Helix 33	AD6	A	903	919	Right-handed alpha
Helix 34	AD7	A	923	955	Right-handed alpha
Helix 35	AD8	A	966	976	Right-handed alpha
Helix 36	AD9	A	980	994	Right-handed alpha
Helix 37	AE1	A	995	1001	Right-handed alpha
Helix 38	AE2	A	1005	1040	Right-handed alpha
Helix 39	AE3	B	6	12	Right-handed alpha
Helix 40	AE4	B	12	33	Right-handed alpha
Helix 41	AE5	B	57	65	Right-handed alpha
Helix 42	AE6	B	65	74	Right-handed alpha
Helix 43	AE7	B	102	119	Right-handed alpha
Helix 44	AE8	B	134	136	Right-handed 310
Helix 45	AE9	B	152	168	Right-handed alpha
Helix 46	AF1	B	192	200	Right-handed alpha
Helix 47	AF2	B	202	211	Right-handed alpha
Helix 48	AF3	B	296	311	Right-handed alpha
Helix 49	AF4	B	327	358	Right-handed alpha
Helix 50	AF5	B	359	368	Right-handed alpha
Helix 51	AF6	B	368	385	Right-handed alpha
Helix 52	AF7	B	389	425	Right-handed alpha
Helix 53	AF8	B	431	462	Right-handed alpha
Helix 54	AF9	B	463	467	Right-handed 310
Helix 55	AG1	B	469	496	Right-handed alpha
Helix 56	AG2	B	496	504	Right-handed alpha
Helix 57	AG3	B	517	535	Right-handed alpha
Helix 58	AG4	B	535	549	Right-handed alpha
Helix 59	AG5	B	550	557	Right-handed alpha
Helix 60	AG6	B	581	597	Right-handed alpha
Helix 61	AG7	B	641	653	Right-handed alpha
Helix 62	AG8	B	664	675	Right-handed alpha
Helix 63	AG9	B	689	705	Right-handed alpha
Helix 64	AH1	B	729	736	Right-handed alpha
Helix 65	AH2	B	739	749	Right-handed alpha
Helix 66	AH3	B	773	777	Right-handed 310
Helix 67	AH4	B	779	784	Right-handed alpha
Helix 68	AH5	B	832	847	Right-handed alpha
Helix 69	AH6	B	861	892	Right-handed alpha
Helix 70	AH7	B	893	902	Right-handed alpha
Helix 71	AH8	B	903	919	Right-handed alpha
Helix 72	AH9	B	923	955	Right-handed alpha
Helix 73	AI1	B	966	976	Right-handed alpha
Helix 74	AI2	B	980	994	Right-handed alpha
Helix 75	AI3	B	995	1001	Right-handed alpha
Helix 76	AI4	B	1005	1040	Right-handed alpha
Helix 77	AI5	C	6	12	Right-handed alpha
Helix 78	AI6	C	12	33	Right-handed alpha
Helix 79	AI7	C	57	65	Right-handed alpha
Helix 80	AI8	C	65	74	Right-handed alpha
Helix 81	AI9	C	102	119	Right-handed alpha
Helix 82	AJ1	C	134	136	Right-handed 310
Helix 83	AJ2	C	152	168	Right-handed alpha
Helix 84	AJ3	C	192	200	Right-handed alpha
Helix 85	AJ4	C	202	211	Right-handed alpha
Helix 86	AJ5	C	296	311	Right-handed alpha
Helix 87	AJ6	C	327	358	Right-handed alpha
Helix 88	AJ7	C	359	368	Right-handed alpha
Helix 89	AJ8	C	368	385	Right-handed alpha
Helix 90	AJ9	C	389	425	Right-handed alpha
Helix 91	AK1	C	431	462	Right-handed alpha
Helix 92	AK2	C	463	467	Right-handed 310
Helix 93	AK3	C	469	496	Right-handed alpha
Helix 94	AK4	C	496	504	Right-handed alpha
Helix 95	AK5	C	517	535	Right-handed alpha
Helix 96	AK6	C	535	549	Right-handed alpha
Helix 97	AK7	C	550	557	Right-handed alpha
Helix 98	AK8	C	581	597	Right-handed alpha
Helix 99	AK9	C	641	653	Right-handed alpha
Helix 100	AL1	C	664	675	Right-handed alpha
Helix 101	AL2	C	689	705	Right-handed alpha
Helix 102	AL3	C	729	736	Right-handed alpha
Helix 103	AL4	C	739	749	Right-handed alpha
Helix 104	AL5	C	773	777	Right-handed 310
Helix 105	AL6	C	779	784	Right-handed alpha
Helix 106	AL7	C	832	847	Right-handed alpha
Helix 107	AL8	C	861	892	Right-handed alpha
Helix 108	AL9	C	893	902	Right-handed alpha
Helix 109	AM1	C	903	919	Right-handed alpha
Helix 110	AM2	C	923	955	Right-handed alpha
Helix 111	AM3	C	966	976	Right-handed alpha
Helix 112	AM4	C	980	994	Right-handed alpha
Helix 113	AM5	C	995	1001	Right-handed alpha
Helix 114	AM6	C	1005	1040	Right-handed alpha

There are 24 sheets in PDB entry 7KF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	79	86	anti-parallel
Strand 5	A	813	816	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	138	146	anti-parallel
Strand 4	A	319	326	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	269	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	764	771	parallel
Strand 4	A	758	761	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	231	anti-parallel
Strand 3	B	721	728	parallel
Strand 4	B	802	809	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	604	610	anti-parallel
Strand 3	A	626	629	anti-parallel
Strand 4	A	569	572	anti-parallel
Strand 5	A	662	663	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	715	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	681	687	anti-parallel
Strand 4	A	854	860	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	809	first strand
Strand 2	A	721	728	anti-parallel
Strand 3	C	228	231	parallel
Strand 4	C	221	223	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	A	795	796	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	79	86	anti-parallel
Strand 5	B	813	816	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	180	first strand
Strand 2	B	285	291	anti-parallel
Strand 3	B	138	146	anti-parallel
Strand 4	B	319	326	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	269	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	764	771	parallel
Strand 4	B	758	761	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	228	231	anti-parallel
Strand 3	C	721	728	parallel
Strand 4	C	802	809	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	257	258	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	604	610	anti-parallel
Strand 3	B	626	629	anti-parallel
Strand 4	B	569	572	anti-parallel
Strand 5	B	662	663	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	715	first strand
Strand 2	B	821	827	anti-parallel
Strand 3	B	681	687	anti-parallel
Strand 4	B	854	860	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	795	796	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	79	86	anti-parallel
Strand 5	C	813	816	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	180	first strand
Strand 2	C	285	291	anti-parallel
Strand 3	C	138	146	anti-parallel
Strand 4	C	319	326	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	269	first strand
Strand 2	C	185	191	anti-parallel
Strand 3	C	764	771	parallel
Strand 4	C	758	761	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	257	258	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	604	610	anti-parallel
Strand 3	C	626	629	anti-parallel
Strand 4	C	569	572	anti-parallel
Strand 5	C	662	663	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	715	first strand
Strand 2	C	821	827	anti-parallel
Strand 3	C	681	687	anti-parallel
Strand 4	C	854	860	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	789	first strand
Strand 2	C	795	796	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KF5