Analysis of interatomic Contacts of Structural Units in PDB entry:
7KF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KF8 entry

There are 3 chains in PDB entry 7KF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	LEU 1040
B	ILE 5	TRP 1039
C	ILE 5	TRP 1039

There are122 helices in PDB entry 7KF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	12	33	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	65	73	Right-handed alpha
Helix 5	AA5	A	74	76	Right-handed 310
Helix 6	AA6	A	102	119	Right-handed alpha
Helix 7	AA7	A	134	136	Right-handed 310
Helix 8	AA8	A	152	168	Right-handed alpha
Helix 9	AA9	A	192	200	Right-handed alpha
Helix 10	AB1	A	202	211	Right-handed alpha
Helix 11	AB2	A	296	311	Right-handed alpha
Helix 12	AB3	A	327	358	Right-handed alpha
Helix 13	AB4	A	359	368	Right-handed alpha
Helix 14	AB5	A	368	385	Right-handed alpha
Helix 15	AB6	A	389	425	Right-handed alpha
Helix 16	AB7	A	431	462	Right-handed alpha
Helix 17	AB8	A	463	467	Right-handed 310
Helix 18	AB9	A	469	496	Right-handed alpha
Helix 19	AC1	A	496	504	Right-handed alpha
Helix 20	AC2	A	517	535	Right-handed alpha
Helix 21	AC3	A	535	549	Right-handed alpha
Helix 22	AC4	A	552	557	Right-handed alpha
Helix 23	AC5	A	581	597	Right-handed alpha
Helix 24	AC6	A	641	653	Right-handed alpha
Helix 25	AC7	A	664	675	Right-handed alpha
Helix 26	AC8	A	689	705	Right-handed alpha
Helix 27	AC9	A	729	736	Right-handed alpha
Helix 28	AD1	A	739	749	Right-handed alpha
Helix 29	AD2	A	773	777	Right-handed 310
Helix 30	AD3	A	779	784	Right-handed alpha
Helix 31	AD4	A	832	847	Right-handed alpha
Helix 32	AD5	A	861	874	Right-handed alpha
Helix 33	AD6	A	875	892	Right-handed alpha
Helix 34	AD7	A	893	902	Right-handed alpha
Helix 35	AD8	A	903	919	Right-handed alpha
Helix 36	AD9	A	923	955	Right-handed alpha
Helix 37	AE1	A	966	976	Right-handed alpha
Helix 38	AE2	A	980	994	Right-handed alpha
Helix 39	AE3	A	995	1001	Right-handed alpha
Helix 40	AE4	A	1005	1040	Right-handed alpha
Helix 41	AE5	B	6	11	Right-handed alpha
Helix 42	AE6	B	12	33	Right-handed alpha
Helix 43	AE7	B	57	65	Right-handed alpha
Helix 44	AE8	B	65	74	Right-handed alpha
Helix 45	AE9	B	102	113	Right-handed alpha
Helix 46	AF1	B	114	119	Right-handed alpha
Helix 47	AF2	B	152	163	Right-handed alpha
Helix 48	AF3	B	163	169	Right-handed alpha
Helix 49	AF4	B	192	200	Right-handed alpha
Helix 50	AF5	B	202	212	Right-handed alpha
Helix 51	AF6	B	239	245	Right-handed alpha
Helix 52	AF7	B	296	312	Right-handed alpha
Helix 53	AF8	B	313	315	Right-handed 310
Helix 54	AF9	B	327	357	Right-handed alpha
Helix 55	AG1	B	362	383	Right-handed alpha
Helix 56	AG2	B	389	422	Right-handed alpha
Helix 57	AG3	B	434	460	Right-handed alpha
Helix 58	AG4	B	461	466	Right-handed alpha
Helix 59	AG5	B	469	495	Right-handed alpha
Helix 60	AG6	B	496	503	Right-handed alpha
Helix 61	AG7	B	517	534	Right-handed alpha
Helix 62	AG8	B	535	550	Right-handed alpha
Helix 63	AG9	B	550	557	Right-handed alpha
Helix 64	AH1	B	581	597	Right-handed alpha
Helix 65	AH2	B	632	636	Right-handed 310
Helix 66	AH3	B	641	653	Right-handed alpha
Helix 67	AH4	B	664	674	Right-handed alpha
Helix 68	AH5	B	689	706	Right-handed alpha
Helix 69	AH6	B	729	735	Right-handed alpha
Helix 70	AH7	B	739	750	Right-handed alpha
Helix 71	AH8	B	773	777	Right-handed 310
Helix 72	AH9	B	779	784	Right-handed alpha
Helix 73	AI1	B	835	848	Right-handed alpha
Helix 74	AI2	B	861	892	Right-handed alpha
Helix 75	AI3	B	893	919	Right-handed alpha
Helix 76	AI4	B	923	953	Right-handed alpha
Helix 77	AI5	B	954	959	Right-handed 310
Helix 78	AI6	B	968	978	Right-handed alpha
Helix 79	AI7	B	981	1000	Right-handed alpha
Helix 80	AI8	B	1005	1020	Right-handed alpha
Helix 81	AI9	B	1022	1037	Right-handed alpha
Helix 82	AJ1	C	6	11	Right-handed alpha
Helix 83	AJ2	C	12	33	Right-handed alpha
Helix 84	AJ3	C	57	65	Right-handed alpha
Helix 85	AJ4	C	65	74	Right-handed alpha
Helix 86	AJ5	C	102	112	Right-handed alpha
Helix 87	AJ6	C	114	119	Right-handed alpha
Helix 88	AJ7	C	152	163	Right-handed alpha
Helix 89	AJ8	C	163	169	Right-handed alpha
Helix 90	AJ9	C	192	200	Right-handed alpha
Helix 91	AK1	C	202	212	Right-handed alpha
Helix 92	AK2	C	239	245	Right-handed alpha
Helix 93	AK3	C	296	312	Right-handed alpha
Helix 94	AK4	C	313	315	Right-handed 310
Helix 95	AK5	C	327	357	Right-handed alpha
Helix 96	AK6	C	362	383	Right-handed alpha
Helix 97	AK7	C	389	422	Right-handed alpha
Helix 98	AK8	C	434	445	Right-handed alpha
Helix 99	AK9	C	446	460	Right-handed alpha
Helix 100	AL1	C	461	467	Right-handed alpha
Helix 101	AL2	C	469	495	Right-handed alpha
Helix 102	AL3	C	496	503	Right-handed alpha
Helix 103	AL4	C	517	534	Right-handed alpha
Helix 104	AL5	C	535	550	Right-handed alpha
Helix 105	AL6	C	550	557	Right-handed alpha
Helix 106	AL7	C	581	597	Right-handed alpha
Helix 107	AL8	C	641	653	Right-handed alpha
Helix 108	AL9	C	664	674	Right-handed alpha
Helix 109	AM1	C	689	706	Right-handed alpha
Helix 110	AM2	C	729	735	Right-handed alpha
Helix 111	AM3	C	739	750	Right-handed alpha
Helix 112	AM4	C	773	777	Right-handed 310
Helix 113	AM5	C	779	784	Right-handed alpha
Helix 114	AM6	C	835	848	Right-handed alpha
Helix 115	AM7	C	861	892	Right-handed alpha
Helix 116	AM8	C	893	919	Right-handed alpha
Helix 117	AM9	C	923	953	Right-handed alpha
Helix 118	AN1	C	954	959	Right-handed 310
Helix 119	AN2	C	968	978	Right-handed alpha
Helix 120	AN3	C	981	1000	Right-handed alpha
Helix 121	AN4	C	1005	1020	Right-handed alpha
Helix 122	AN5	C	1022	1037	Right-handed alpha

There are 26 sheets in PDB entry 7KF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	79	86	anti-parallel
Strand 5	A	813	816	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	138	146	anti-parallel
Strand 4	A	319	326	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	269	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	764	771	parallel
Strand 4	A	755	761	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	230	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	C	719	728	parallel
Strand 3	C	802	810	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	604	610	anti-parallel
Strand 3	A	626	629	anti-parallel
Strand 4	A	569	572	anti-parallel
Strand 5	A	662	663	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	715	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	681	687	anti-parallel
Strand 4	A	854	860	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	809	first strand
Strand 2	A	721	728	anti-parallel
Strand 3	B	230	233	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	A	795	796	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	79	86	anti-parallel
Strand 5	B	813	816	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	181	first strand
Strand 2	B	285	291	anti-parallel
Strand 3	B	138	146	anti-parallel
Strand 4	B	319	326	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	269	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	765	771	parallel
Strand 4	B	755	760	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	257	258	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	602	610	anti-parallel
Strand 3	B	624	630	anti-parallel
Strand 4	B	569	572	anti-parallel
Strand 5	B	662	663	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	826	first strand
Strand 2	B	681	687	anti-parallel
Strand 3	B	854	860	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	728	first strand
Strand 2	B	802	809	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	795	796	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	79	86	anti-parallel
Strand 5	C	813	816	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	181	first strand
Strand 2	C	285	291	anti-parallel
Strand 3	C	138	146	anti-parallel
Strand 4	C	319	326	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	269	first strand
Strand 2	C	185	191	anti-parallel
Strand 3	C	765	771	parallel
Strand 4	C	755	760	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	228	229	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	257	258	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	602	610	anti-parallel
Strand 3	C	624	630	anti-parallel
Strand 4	C	569	572	anti-parallel
Strand 5	C	662	663	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	821	826	first strand
Strand 2	C	681	687	anti-parallel
Strand 3	C	854	860	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	789	first strand
Strand 2	C	795	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KF8