Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KGD entry

There are 3 chains in PDB entry 7KGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 1027
B	MET 1	PHE 1027
C	MET 1	PHE 1027

There are111 helices in PDB entry 7KGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	8	Right-handed alpha
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	70	Right-handed alpha
Helix 4	AA4	A	99	115	Right-handed alpha
Helix 5	AA5	A	119	126	Right-handed alpha
Helix 6	AA6	A	150	161	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed alpha
Helix 8	AA8	A	189	196	Right-handed alpha
Helix 9	AA9	A	199	211	Right-handed alpha
Helix 10	AB1	A	242	248	Right-handed alpha
Helix 11	AB2	A	262	265	Right-handed alpha
Helix 12	AB3	A	298	317	Right-handed alpha
Helix 13	AB4	A	329	359	Right-handed alpha
Helix 14	AB5	A	361	387	Right-handed alpha
Helix 15	AB6	A	391	406	Right-handed alpha
Helix 16	AB7	A	406	424	Right-handed alpha
Helix 17	AB8	A	426	458	Right-handed alpha
Helix 18	AB9	A	461	496	Right-handed alpha
Helix 19	AC1	A	509	533	Right-handed alpha
Helix 20	AC2	A	534	556	Right-handed alpha
Helix 21	AC3	A	580	598	Right-handed alpha
Helix 22	AC4	A	635	648	Right-handed alpha
Helix 23	AC5	A	683	701	Right-handed alpha
Helix 24	AC6	A	723	730	Right-handed alpha
Helix 25	AC7	A	733	746	Right-handed alpha
Helix 26	AC8	A	768	771	Right-handed 310
Helix 27	AC9	A	773	779	Right-handed alpha
Helix 28	AD1	A	792	795	Right-handed alpha
Helix 29	AD2	A	827	841	Right-handed alpha
Helix 30	AD3	A	852	863	Right-handed alpha
Helix 31	AD4	A	863	884	Right-handed alpha
Helix 32	AD5	A	887	894	Right-handed alpha
Helix 33	AD6	A	895	911	Right-handed alpha
Helix 34	AD7	A	915	947	Right-handed alpha
Helix 35	AD8	A	949	976	Right-handed alpha
Helix 36	AD9	A	976	982	Right-handed alpha
Helix 37	AE1	A	986	1027	Right-handed alpha
Helix 38	AE2	B	2	8	Right-handed alpha
Helix 39	AE3	B	8	30	Right-handed alpha
Helix 40	AE4	B	53	70	Right-handed alpha
Helix 41	AE5	B	99	115	Right-handed alpha
Helix 42	AE6	B	119	126	Right-handed alpha
Helix 43	AE7	B	150	161	Right-handed alpha
Helix 44	AE8	B	161	169	Right-handed alpha
Helix 45	AE9	B	189	196	Right-handed alpha
Helix 46	AF1	B	199	211	Right-handed alpha
Helix 47	AF2	B	242	248	Right-handed alpha
Helix 48	AF3	B	262	265	Right-handed alpha
Helix 49	AF4	B	298	317	Right-handed alpha
Helix 50	AF5	B	329	359	Right-handed alpha
Helix 51	AF6	B	361	387	Right-handed alpha
Helix 52	AF7	B	391	406	Right-handed alpha
Helix 53	AF8	B	406	424	Right-handed alpha
Helix 54	AF9	B	426	458	Right-handed alpha
Helix 55	AG1	B	461	496	Right-handed alpha
Helix 56	AG2	B	509	533	Right-handed alpha
Helix 57	AG3	B	534	556	Right-handed alpha
Helix 58	AG4	B	580	598	Right-handed alpha
Helix 59	AG5	B	635	648	Right-handed alpha
Helix 60	AG6	B	683	701	Right-handed alpha
Helix 61	AG7	B	723	730	Right-handed alpha
Helix 62	AG8	B	733	746	Right-handed alpha
Helix 63	AG9	B	768	771	Right-handed 310
Helix 64	AH1	B	773	779	Right-handed alpha
Helix 65	AH2	B	792	795	Right-handed alpha
Helix 66	AH3	B	827	841	Right-handed alpha
Helix 67	AH4	B	852	863	Right-handed alpha
Helix 68	AH5	B	863	884	Right-handed alpha
Helix 69	AH6	B	887	894	Right-handed alpha
Helix 70	AH7	B	895	911	Right-handed alpha
Helix 71	AH8	B	915	947	Right-handed alpha
Helix 72	AH9	B	949	976	Right-handed alpha
Helix 73	AI1	B	976	982	Right-handed alpha
Helix 74	AI2	B	986	1027	Right-handed alpha
Helix 75	AI3	C	2	8	Right-handed alpha
Helix 76	AI4	C	8	30	Right-handed alpha
Helix 77	AI5	C	53	70	Right-handed alpha
Helix 78	AI6	C	99	115	Right-handed alpha
Helix 79	AI7	C	119	126	Right-handed alpha
Helix 80	AI8	C	150	161	Right-handed alpha
Helix 81	AI9	C	161	169	Right-handed alpha
Helix 82	AJ1	C	189	196	Right-handed alpha
Helix 83	AJ2	C	199	211	Right-handed alpha
Helix 84	AJ3	C	242	248	Right-handed alpha
Helix 85	AJ4	C	262	265	Right-handed alpha
Helix 86	AJ5	C	298	317	Right-handed alpha
Helix 87	AJ6	C	329	359	Right-handed alpha
Helix 88	AJ7	C	361	387	Right-handed alpha
Helix 89	AJ8	C	391	406	Right-handed alpha
Helix 90	AJ9	C	406	424	Right-handed alpha
Helix 91	AK1	C	426	458	Right-handed alpha
Helix 92	AK2	C	461	496	Right-handed alpha
Helix 93	AK3	C	509	533	Right-handed alpha
Helix 94	AK4	C	534	556	Right-handed alpha
Helix 95	AK5	C	580	598	Right-handed alpha
Helix 96	AK6	C	635	648	Right-handed alpha
Helix 97	AK7	C	683	701	Right-handed alpha
Helix 98	AK8	C	723	730	Right-handed alpha
Helix 99	AK9	C	733	746	Right-handed alpha
Helix 100	AL1	C	768	771	Right-handed 310
Helix 101	AL2	C	773	779	Right-handed alpha
Helix 102	AL3	C	792	795	Right-handed alpha
Helix 103	AL4	C	827	841	Right-handed alpha
Helix 104	AL5	C	852	863	Right-handed alpha
Helix 105	AL6	C	863	884	Right-handed alpha
Helix 106	AL7	C	887	894	Right-handed alpha
Helix 107	AL8	C	895	911	Right-handed alpha
Helix 108	AL9	C	915	947	Right-handed alpha
Helix 109	AM1	C	949	976	Right-handed alpha
Helix 110	AM2	C	976	982	Right-handed alpha
Helix 111	AM3	C	986	1027	Right-handed alpha

There are 24 sheets in PDB entry 7KGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	82	anti-parallel
Strand 5	A	808	810	anti-parallel
Strand 6	A	813	822	anti-parallel
Strand 7	A	704	710	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	82	anti-parallel
Strand 5	A	808	810	anti-parallel
Strand 6	A	813	822	anti-parallel
Strand 7	A	672	678	anti-parallel
Strand 8	A	846	851	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	285	293	anti-parallel
Strand 3	A	139	143	anti-parallel
Strand 4	A	322	324	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	285	293	anti-parallel
Strand 3	A	278	280	anti-parallel
Strand 4	A	601	608	anti-parallel
Strand 5	A	619	626	anti-parallel
Strand 6	A	568	574	anti-parallel
Strand 7	A	654	658	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	758	766	parallel
Strand 4	A	748	755	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	233	236	anti-parallel
Strand 3	C	715	722	parallel
Strand 4	C	796	803	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	259	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	803	first strand
Strand 2	A	715	722	anti-parallel
Strand 3	B	233	236	parallel
Strand 4	B	217	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	782	first strand
Strand 2	A	790	791	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	82	anti-parallel
Strand 5	B	808	810	anti-parallel
Strand 6	B	813	822	anti-parallel
Strand 7	B	704	710	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	82	anti-parallel
Strand 5	B	808	810	anti-parallel
Strand 6	B	813	822	anti-parallel
Strand 7	B	672	678	anti-parallel
Strand 8	B	846	851	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	285	293	anti-parallel
Strand 3	B	139	143	anti-parallel
Strand 4	B	322	324	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	285	293	anti-parallel
Strand 3	B	278	280	anti-parallel
Strand 4	B	601	608	anti-parallel
Strand 5	B	619	626	anti-parallel
Strand 6	B	568	574	anti-parallel
Strand 7	B	654	658	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	758	766	parallel
Strand 4	B	748	755	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	259	261	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	803	first strand
Strand 2	B	715	722	anti-parallel
Strand 3	C	233	236	parallel
Strand 4	C	217	218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	782	first strand
Strand 2	B	790	791	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	82	anti-parallel
Strand 5	C	808	810	anti-parallel
Strand 6	C	813	822	anti-parallel
Strand 7	C	704	710	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	82	anti-parallel
Strand 5	C	808	810	anti-parallel
Strand 6	C	813	822	anti-parallel
Strand 7	C	672	678	anti-parallel
Strand 8	C	846	851	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	285	293	anti-parallel
Strand 3	C	139	143	anti-parallel
Strand 4	C	322	324	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	285	293	anti-parallel
Strand 3	C	278	280	anti-parallel
Strand 4	C	601	608	anti-parallel
Strand 5	C	619	626	anti-parallel
Strand 6	C	568	574	anti-parallel
Strand 7	C	654	658	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	758	766	parallel
Strand 4	C	748	755	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	782	first strand
Strand 2	C	790	791	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGD