Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KGM entry

There is 1 chain in PDB entry 7KGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 72LEU 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7KGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 82Right-handed alpha
Helix 2
AA2
A
95 102Right-handed alpha
Helix 3
AA3
A
112 123Right-handed alpha
Helix 4
AA4
A
131 149Right-handed alpha
Helix 5
AA5
A
151 162Right-handed alpha
Helix 6
AA6
A
168 197Right-handed alpha
Helix 7
AA7
A
209 223Right-handed alpha
Helix 8
AA8
A
224 232Right-handed alpha
Helix 9
AA9
A
238 252Right-handed alpha
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
327 341Right-handed alpha
Helix 12
AB3
A
350 358Right-handed alpha
Helix 13
AB4
A
360 375Right-handed alpha
Helix 14
AB5
A
376 378Right-handed 310
Helix 15
AB6
A
413 417Right-handed 310
Helix 16
AB7
A
437 444Right-handed alpha
Helix 17
AB8
A
445 449Right-handed 310
Helix 18
AB9
A
454 459Right-handed alpha
Helix 19
AC1
A
479 483Right-handed 310
Helix 20
AC2
A
522 528Right-handed 310
Helix 21
AC3
A
542 554Right-handed alpha
Helix 22
AC4
A
557 568Right-handed alpha
Helix 23
AC5
A
614 620Right-handed alpha
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There are 3 sheets in PDB entry 7KGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
580 584anti-parallel
Strand 3
A
386 389parallel
Strand 4
A
394 399anti-parallel
Strand 5
A
402 410anti-parallel
Strand 6
A
538 540anti-parallel
Strand 7
A
517 518parallel
Strand 8
A
505 508anti-parallel
Strand 9
A
427 430anti-parallel
Strand 10
A
571 574anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
491 494anti-parallel
Strand 3
A
461 464anti-parallel
Strand 4
A
472 473anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
596 598anti-parallel
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