Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KGV entry

There are 5 chains in PDB entry 7KGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 80	MET 549
B	ASP 75	MET 549
C	GLN 1	ALA 219
D	GLN 1	ALA 219
E	ASP 1	GLU 90

There are 55 helices in PDB entry 7KGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	119	Right-handed alpha
Helix 2	AA2	A	120	124	Right-handed 310
Helix 3	AA3	A	125	134	Right-handed alpha
Helix 4	AA4	A	134	159	Right-handed alpha
Helix 5	AA5	A	185	220	Right-handed alpha
Helix 6	AA6	A	282	287	Right-handed 310
Helix 7	AA7	A	298	302	Right-handed 310
Helix 8	AA8	A	303	325	Right-handed alpha
Helix 9	AA9	A	346	358	Right-handed alpha
Helix 10	AB1	A	360	368	Right-handed alpha
Helix 11	AB2	A	379	403	Right-handed alpha
Helix 12	AB3	A	409	413	Right-handed 310
Helix 13	AB4	A	416	420	Right-handed 310
Helix 14	AB5	A	425	441	Right-handed alpha
Helix 15	AB6	A	442	453	Right-handed alpha
Helix 16	AB7	A	470	487	Right-handed alpha
Helix 17	AB8	A	489	506	Right-handed alpha
Helix 18	AB9	A	507	517	Right-handed alpha
Helix 19	AC1	A	528	548	Right-handed alpha
Helix 20	AC2	B	107	119	Right-handed alpha
Helix 21	AC3	B	122	124	Right-handed 310
Helix 22	AC4	B	125	134	Right-handed alpha
Helix 23	AC5	B	134	159	Right-handed alpha
Helix 24	AC6	B	185	220	Right-handed alpha
Helix 25	AC7	B	278	283	Right-handed alpha
Helix 26	AC8	B	284	287	Right-handed 310
Helix 27	AC9	B	298	302	Right-handed 310
Helix 28	AD1	B	303	325	Right-handed alpha
Helix 29	AD2	B	347	358	Right-handed alpha
Helix 30	AD3	B	360	369	Right-handed alpha
Helix 31	AD4	B	376	403	Right-handed alpha
Helix 32	AD5	B	409	413	Right-handed 310
Helix 33	AD6	B	416	421	Right-handed 310
Helix 34	AD7	B	425	441	Right-handed alpha
Helix 35	AD8	B	442	455	Right-handed alpha
Helix 36	AD9	B	465	486	Right-handed alpha
Helix 37	AE1	B	489	506	Right-handed alpha
Helix 38	AE2	B	507	517	Right-handed alpha
Helix 39	AE3	B	525	545	Right-handed alpha
Helix 40	AE4	C	28	31	Right-handed 310
Helix 41	AE5	C	61	65	Right-handed 310
Helix 42	AE6	C	87	91	Right-handed 310
Helix 43	AE7	C	162	164	Right-handed 310
Helix 44	AE8	C	206	209	Right-handed 310
Helix 45	AE9	D	28	31	Right-handed 310
Helix 46	AF1	D	61	65	Right-handed 310
Helix 47	AF2	D	87	91	Right-handed 310
Helix 48	AF3	D	162	164	Right-handed 310
Helix 49	AF4	D	206	209	Right-handed 310
Helix 50	AF5	E	82	86	Right-handed 310
Helix 51	AF6	E	124	129	Right-handed alpha
Helix 52	AF7	E	185	190	Right-handed alpha
Helix 53	AF8	F	82	86	Right-handed 310
Helix 54	AF9	F	124	129	Right-handed alpha
Helix 55	AG1	F	185	190	Right-handed alpha

There are 21 sheets in PDB entry 7KGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	175	176	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	180	190	anti-parallel
Strand 4	D	169	171	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	180	190	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	210	215	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	65	70	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	105	110	parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	48	52	anti-parallel
Strand 6	E	56	57	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	105	110	parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	100	101	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	133	142	anti-parallel
Strand 3	E	181	184	anti-parallel
Strand 4	E	162	163	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	133	142	anti-parallel
Strand 3	E	176	179	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	148	153	anti-parallel
Strand 3	E	194	201	anti-parallel
Strand 4	E	204	213	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	65	70	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	105	110	parallel
Strand 3	F	88	93	anti-parallel
Strand 4	F	36	41	anti-parallel
Strand 5	F	48	52	anti-parallel
Strand 6	F	56	57	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	133	142	anti-parallel
Strand 3	F	176	179	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	133	142	anti-parallel
Strand 3	F	182	184	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	148	153	anti-parallel
Strand 3	F	194	201	anti-parallel
Strand 4	F	204	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGV