Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KGY entry

There are 4 chains in PDB entry 7KGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLN 608
B	ASN 3	GLN 608
C	ASN 2	GLN 608
D	ASN 2	GLN 608

There are 56 helices in PDB entry 7KGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	56	59	Right-handed 310
Helix 3	AA3	A	61	66	Right-handed alpha
Helix 4	AA4	A	80	84	Right-handed 310
Helix 5	AA5	A	311	326	Right-handed alpha
Helix 6	AA6	A	338	349	Right-handed alpha
Helix 7	AA7	A	380	384	Right-handed 310
Helix 8	AA8	A	386	406	Right-handed alpha
Helix 9	AA9	A	426	442	Right-handed alpha
Helix 10	AB1	A	463	467	Right-handed 310
Helix 11	AB2	A	482	484	Right-handed 310
Helix 12	AB3	A	485	501	Right-handed alpha
Helix 13	AB4	A	531	547	Right-handed alpha
Helix 14	AB5	A	587	600	Right-handed alpha
Helix 15	AB6	B	38	42	Right-handed 310
Helix 16	AB7	B	56	59	Right-handed 310
Helix 17	AB8	B	61	66	Right-handed alpha
Helix 18	AB9	B	80	84	Right-handed 310
Helix 19	AC1	B	311	326	Right-handed alpha
Helix 20	AC2	B	338	349	Right-handed alpha
Helix 21	AC3	B	380	384	Right-handed 310
Helix 22	AC4	B	386	406	Right-handed alpha
Helix 23	AC5	B	426	442	Right-handed alpha
Helix 24	AC6	B	463	467	Right-handed 310
Helix 25	AC7	B	482	484	Right-handed 310
Helix 26	AC8	B	485	502	Right-handed alpha
Helix 27	AC9	B	531	547	Right-handed alpha
Helix 28	AD1	B	587	600	Right-handed alpha
Helix 29	AD2	C	38	42	Right-handed 310
Helix 30	AD3	C	56	59	Right-handed 310
Helix 31	AD4	C	61	66	Right-handed alpha
Helix 32	AD5	C	80	84	Right-handed 310
Helix 33	AD6	C	311	326	Right-handed alpha
Helix 34	AD7	C	338	349	Right-handed alpha
Helix 35	AD8	C	380	384	Right-handed 310
Helix 36	AD9	C	386	406	Right-handed alpha
Helix 37	AE1	C	426	442	Right-handed alpha
Helix 38	AE2	C	463	467	Right-handed 310
Helix 39	AE3	C	482	484	Right-handed 310
Helix 40	AE4	C	485	501	Right-handed alpha
Helix 41	AE5	C	531	547	Right-handed alpha
Helix 42	AE6	C	587	598	Right-handed alpha
Helix 43	AE7	D	38	42	Right-handed 310
Helix 44	AE8	D	56	59	Right-handed 310
Helix 45	AE9	D	61	66	Right-handed alpha
Helix 46	AF1	D	80	84	Right-handed 310
Helix 47	AF2	D	311	326	Right-handed alpha
Helix 48	AF3	D	338	349	Right-handed alpha
Helix 49	AF4	D	380	384	Right-handed 310
Helix 50	AF5	D	386	406	Right-handed alpha
Helix 51	AF6	D	426	442	Right-handed alpha
Helix 52	AF7	D	463	467	Right-handed 310
Helix 53	AF8	D	482	484	Right-handed 310
Helix 54	AF9	D	485	504	Right-handed alpha
Helix 55	AG1	D	531	549	Right-handed alpha
Helix 56	AG2	D	587	600	Right-handed alpha

There are 32 sheets in PDB entry 7KGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	178	183	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	118	121	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	70	79	anti-parallel
Strand 4	A	130	139	anti-parallel
Strand 5	A	98	103	anti-parallel
Strand 6	A	106	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	173	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	160	164	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	197	first strand
Strand 2	A	201	210	anti-parallel
Strand 3	A	234	240	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	253	261	anti-parallel
Strand 4	A	264	273	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	290	291	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	298	first strand
Strand 2	A	329	331	parallel
Strand 3	A	351	355	parallel
Strand 4	A	411	418	parallel
Strand 5	A	448	452	parallel
Strand 6	A	470	473	parallel
Strand 7	A	509	513	parallel
Strand 8	A	552	557	parallel
Strand 9	A	294	298	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	178	183	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	118	121	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	70	79	anti-parallel
Strand 4	B	130	139	anti-parallel
Strand 5	B	98	103	anti-parallel
Strand 6	B	106	112	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	173	174	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	160	164	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	197	first strand
Strand 2	B	201	210	anti-parallel
Strand 3	B	234	240	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	253	261	anti-parallel
Strand 4	B	264	273	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	290	291	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	298	first strand
Strand 2	B	329	331	parallel
Strand 3	B	351	355	parallel
Strand 4	B	411	418	parallel
Strand 5	B	448	452	parallel
Strand 6	B	470	473	parallel
Strand 7	B	509	513	parallel
Strand 8	B	552	557	parallel
Strand 9	B	294	298	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	178	183	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	118	121	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	70	79	anti-parallel
Strand 4	C	130	139	anti-parallel
Strand 5	C	98	103	anti-parallel
Strand 6	C	106	112	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	173	174	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	160	164	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	198	first strand
Strand 2	C	201	210	anti-parallel
Strand 3	C	234	240	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	231	first strand
Strand 2	C	215	222	anti-parallel
Strand 3	C	253	261	anti-parallel
Strand 4	C	264	273	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	281	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	290	292	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	298	first strand
Strand 2	C	329	331	parallel
Strand 3	C	351	355	parallel
Strand 4	C	411	418	parallel
Strand 5	C	448	452	parallel
Strand 6	C	470	473	parallel
Strand 7	C	509	513	parallel
Strand 8	C	552	557	parallel
Strand 9	C	294	298	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	178	183	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	118	121	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	70	79	anti-parallel
Strand 4	D	130	139	anti-parallel
Strand 5	D	98	103	anti-parallel
Strand 6	D	106	112	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	173	174	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	160	164	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	197	first strand
Strand 2	D	201	210	anti-parallel
Strand 3	D	234	240	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	231	first strand
Strand 2	D	215	222	anti-parallel
Strand 3	D	253	261	anti-parallel
Strand 4	D	264	273	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	284	287	anti-parallel
Strand 3	D	290	292	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	298	first strand
Strand 2	D	329	331	parallel
Strand 3	D	351	355	parallel
Strand 4	D	411	418	parallel
Strand 5	D	448	452	parallel
Strand 6	D	470	473	parallel
Strand 7	D	509	513	parallel
Strand 8	D	552	557	parallel
Strand 9	D	294	298	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGY