Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KGZ entry

There are 2 chains in PDB entry 7KGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 633
B	MET 1	ASN 634

There are 26 helices in PDB entry 7KGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	103	Right-handed 310
Helix 2	AA2	A	222	226	Right-handed 310
Helix 3	AA3	A	285	300	Right-handed alpha
Helix 4	AA4	A	312	323	Right-handed alpha
Helix 5	AA5	A	337	339	Right-handed 310
Helix 6	AA6	A	340	356	Right-handed alpha
Helix 7	AA7	A	370	374	Right-handed 310
Helix 8	AA8	A	377	395	Right-handed alpha
Helix 9	AA9	A	412	417	Right-handed 310
Helix 10	AB1	A	434	448	Right-handed alpha
Helix 11	AB2	A	477	494	Right-handed alpha
Helix 12	AB3	A	536	547	Right-handed alpha
Helix 13	AB4	A	628	632	Right-handed 310
Helix 14	AB5	B	100	103	Right-handed 310
Helix 15	AB6	B	222	226	Right-handed 310
Helix 16	AB7	B	285	300	Right-handed alpha
Helix 17	AB8	B	312	323	Right-handed alpha
Helix 18	AB9	B	337	339	Right-handed 310
Helix 19	AC1	B	340	356	Right-handed alpha
Helix 20	AC2	B	370	373	Right-handed 310
Helix 21	AC3	B	377	395	Right-handed alpha
Helix 22	AC4	B	412	417	Right-handed 310
Helix 23	AC5	B	434	448	Right-handed alpha
Helix 24	AC6	B	477	494	Right-handed alpha
Helix 25	AC7	B	536	547	Right-handed alpha
Helix 26	AC8	B	628	632	Right-handed 310

There are 20 sheets in PDB entry 7KGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	64	69	anti-parallel
Strand 4	A	95	98	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	11	14	anti-parallel
Strand 3	A	47	55	anti-parallel
Strand 4	A	106	114	anti-parallel
Strand 5	A	75	80	anti-parallel
Strand 6	A	83	89	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	173	185	anti-parallel
Strand 3	A	158	168	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	173	185	anti-parallel
Strand 3	A	208	215	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	203	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	230	235	anti-parallel
Strand 4	A	241	246	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	258	261	anti-parallel
Strand 3	A	264	265	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	272	first strand
Strand 2	A	303	306	parallel
Strand 3	A	325	329	parallel
Strand 4	A	361	368	parallel
Strand 5	A	400	404	parallel
Strand 6	A	420	424	parallel
Strand 7	A	453	457	parallel
Strand 8	A	498	503	parallel
Strand 9	A	268	272	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	516	first strand
Strand 2	A	519	523	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	566	573	anti-parallel
Strand 3	A	594	601	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	615	623	parallel
Strand 3	A	605	612	anti-parallel
Strand 4	A	577	582	anti-parallel
Strand 5	A	585	591	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	138	143	anti-parallel
Strand 3	B	64	69	anti-parallel
Strand 4	B	95	98	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	11	14	anti-parallel
Strand 3	B	47	55	anti-parallel
Strand 4	B	106	114	anti-parallel
Strand 5	B	75	80	anti-parallel
Strand 6	B	83	89	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	173	185	anti-parallel
Strand 3	B	158	168	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	173	185	anti-parallel
Strand 3	B	208	215	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	190	195	anti-parallel
Strand 3	B	230	235	anti-parallel
Strand 4	B	241	246	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	254	first strand
Strand 2	B	258	261	anti-parallel
Strand 3	B	264	265	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	272	first strand
Strand 2	B	303	306	parallel
Strand 3	B	325	329	parallel
Strand 4	B	361	368	parallel
Strand 5	B	400	404	parallel
Strand 6	B	421	424	parallel
Strand 7	B	453	457	parallel
Strand 8	B	498	503	parallel
Strand 9	B	268	272	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	516	first strand
Strand 2	B	519	523	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	554	first strand
Strand 2	B	566	573	anti-parallel
Strand 3	B	594	601	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	562	first strand
Strand 2	B	615	623	parallel
Strand 3	B	605	612	anti-parallel
Strand 4	B	577	582	anti-parallel
Strand 5	B	585	591	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KGZ