Analysis of interatomic Contacts of Structural Units in PDB entry:
7KHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KHK entry

There are 2 chains in PDB entry 7KHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 566SER 931
B
 ASN 567SER 929
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7KHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
572 576Right-handed 310
Helix 2
AA2
A
579 583Right-handed 310
Helix 3
AA3
A
585 587Right-handed 310
Helix 4
AA4
A
632 648Right-handed alpha
Helix 5
AA5
A
678 685Right-handed alpha
Helix 6
AA6
A
765 786Right-handed alpha
Helix 7
AA7
A
794 796Right-handed 310
Helix 8
AA8
A
832 836Right-handed 310
Helix 9
AA9
A
837 843Right-handed alpha
Helix 10
AB1
A
847 864Right-handed alpha
Helix 11
AB2
A
876 886Right-handed alpha
Helix 12
AB3
A
896 907Right-handed alpha
Helix 13
AB4
A
910 914Right-handed 310
Helix 14
AB5
A
916 930Right-handed alpha
Helix 15
AB6
B
572 576Right-handed 310
Helix 16
AB7
B
579 583Right-handed 310
Helix 17
AB8
B
585 587Right-handed 310
Helix 18
AB9
B
632 648Right-handed alpha
Helix 19
AC1
B
677 682Right-handed alpha
Helix 20
AC2
B
766 786Right-handed alpha
Helix 21
AC3
B
794 796Right-handed 310
Helix 22
AC4
B
832 836Right-handed 310
Helix 23
AC5
B
837 844Right-handed alpha
Helix 24
AC6
B
847 864Right-handed alpha
Helix 25
AC7
B
876 886Right-handed alpha
Helix 26
AC8
B
896 907Right-handed alpha
Helix 27
AC9
B
910 914Right-handed 310
Helix 28
AD1
B
916 929Right-handed alpha
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There are 8 sheets in PDB entry 7KHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 596first strand
Strand 2
A
602 609anti-parallel
Strand 3
A
617 624anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
656 660anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 677first strand
Strand 2
A
798 801anti-parallel
Strand 3
A
805 808anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
815 816anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 824first strand
Strand 2
A
845 846anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 591first strand
Strand 2
B
602 608anti-parallel
Strand 3
B
618 624anti-parallel
Strand 4
B
667 671anti-parallel
Strand 5
B
656 660anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
788 789first strand
Strand 2
B
815 816anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
798 800first strand
Strand 2
B
806 808anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 824first strand
Strand 2
B
845 846anti-parallel
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