Analysis of interatomic Contacts of Structural Units in PDB entry:
7KIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KIM entry

There are 11 chains in PDB entry 7KIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	GLY -1	ALA 1282
E	GLY 27	GLY 109
F	GLU 206	LEU 527
J	ASP 3	GLY 111
M	ILE 2	ALA 160
O	G 11	C 55
P	G 100	C 144
Z	GLN 9	LYS 88

There are119 helices in PDB entry 7KIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	224	Right-handed alpha
Helix 5	AA5	B	30	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	57	66	Right-handed alpha
Helix 10	AB1	C	67	77	Right-handed alpha
Helix 11	AB2	C	84	94	Right-handed alpha
Helix 12	AB3	C	118	125	Right-handed alpha
Helix 13	AB4	C	233	242	Right-handed alpha
Helix 14	AB5	C	244	252	Right-handed alpha
Helix 15	AB6	C	255	265	Right-handed alpha
Helix 16	AB7	C	269	282	Right-handed alpha
Helix 17	AB8	C	288	301	Right-handed alpha
Helix 18	AB9	C	309	320	Right-handed alpha
Helix 19	AC1	C	334	351	Right-handed alpha
Helix 20	AC2	C	380	407	Right-handed alpha
Helix 21	AC3	C	413	418	Right-handed alpha
Helix 22	AC4	C	420	432	Right-handed alpha
Helix 23	AC5	C	444	452	Right-handed alpha
Helix 24	AC6	C	532	539	Right-handed alpha
Helix 25	AC7	C	589	593	Right-handed 310
Helix 26	AC8	C	596	600	Right-handed 310
Helix 27	AC9	C	601	612	Right-handed alpha
Helix 28	AD1	C	632	637	Right-handed alpha
Helix 29	AD2	C	739	744	Right-handed alpha
Helix 30	AD3	C	815	826	Right-handed alpha
Helix 31	AD4	C	928	943	Right-handed alpha
Helix 32	AD5	C	953	958	Right-handed 310
Helix 33	AD6	C	981	991	Right-handed alpha
Helix 34	AD7	C	1036	1041	Right-handed alpha
Helix 35	AD8	C	1069	1080	Right-handed alpha
Helix 36	AD9	C	1081	1091	Right-handed alpha
Helix 37	AE1	C	1095	1109	Right-handed alpha
Helix 38	AE2	C	1118	1131	Right-handed alpha
Helix 39	AE3	D	16	24	Right-handed alpha
Helix 40	AE4	D	48	53	Right-handed alpha
Helix 41	AE5	D	84	90	Right-handed 310
Helix 42	AE6	D	112	119	Right-handed alpha
Helix 43	AE7	D	121	130	Right-handed alpha
Helix 44	AE8	D	141	186	Right-handed alpha
Helix 45	AE9	D	190	228	Right-handed alpha
Helix 46	AF1	D	237	249	Right-handed alpha
Helix 47	AF2	D	257	267	Right-handed alpha
Helix 48	AF3	D	269	284	Right-handed alpha
Helix 49	AF4	D	286	305	Right-handed alpha
Helix 50	AF5	D	309	311	Right-handed 310
Helix 51	AF6	D	339	361	Right-handed alpha
Helix 52	AF7	D	363	383	Right-handed alpha
Helix 53	AF8	D	393	397	Right-handed 310
Helix 54	AF9	D	402	406	Right-handed 310
Helix 55	AG1	D	407	411	Right-handed 310
Helix 56	AG2	D	444	452	Right-handed alpha
Helix 57	AG3	D	452	463	Right-handed alpha
Helix 58	AG4	D	468	479	Right-handed alpha
Helix 59	AG5	D	481	492	Right-handed alpha
Helix 60	AG6	D	505	507	Right-handed 310
Helix 61	AG7	D	528	533	Right-handed alpha
Helix 62	AG8	D	548	558	Right-handed alpha
Helix 63	AG9	D	560	564	Right-handed 310
Helix 64	AH1	D	578	590	Right-handed alpha
Helix 65	AH2	D	614	624	Right-handed alpha
Helix 66	AH3	D	643	651	Right-handed alpha
Helix 67	AH4	D	668	675	Right-handed alpha
Helix 68	AH5	D	689	704	Right-handed alpha
Helix 69	AH6	D	705	725	Right-handed alpha
Helix 70	AH7	D	732	736	Right-handed 310
Helix 71	AH8	D	741	762	Right-handed alpha
Helix 72	AH9	D	766	793	Right-handed alpha
Helix 73	AI1	D	797	805	Right-handed alpha
Helix 74	AI2	D	810	818	Right-handed alpha
Helix 75	AI3	D	845	881	Right-handed alpha
Helix 76	AI4	D	945	956	Right-handed alpha
Helix 77	AI5	D	975	980	Right-handed alpha
Helix 78	AI6	D	994	1005	Right-handed alpha
Helix 79	AI7	D	1027	1036	Right-handed alpha
Helix 80	AI8	D	1117	1144	Right-handed alpha
Helix 81	AI9	D	1150	1162	Right-handed alpha
Helix 82	AJ1	D	1183	1193	Right-handed alpha
Helix 83	AJ2	D	1209	1216	Right-handed alpha
Helix 84	AJ3	D	1219	1224	Right-handed alpha
Helix 85	AJ4	D	1228	1240	Right-handed alpha
Helix 86	AJ5	D	1248	1254	Right-handed alpha
Helix 87	AJ6	D	1275	1280	Right-handed alpha
Helix 88	AJ7	E	33	37	Right-handed 310
Helix 89	AJ8	E	39	44	Right-handed alpha
Helix 90	AJ9	E	49	70	Right-handed alpha
Helix 91	AK1	E	90	101	Right-handed alpha
Helix 92	AK2	F	208	223	Right-handed alpha
Helix 93	AK3	F	227	236	Right-handed alpha
Helix 94	AK4	F	242	268	Right-handed alpha
Helix 95	AK5	F	274	308	Right-handed alpha
Helix 96	AK6	F	309	311	Right-handed 310
Helix 97	AK7	F	316	334	Right-handed alpha
Helix 98	AK8	F	342	362	Right-handed alpha
Helix 99	AK9	F	369	391	Right-handed alpha
Helix 100	AL1	F	395	404	Right-handed alpha
Helix 101	AL2	F	406	418	Right-handed alpha
Helix 102	AL3	F	434	437	Right-handed 310
Helix 103	AL4	F	448	465	Right-handed alpha
Helix 104	AL5	F	468	480	Right-handed alpha
Helix 105	AL6	F	488	497	Right-handed alpha
Helix 106	AL7	F	499	516	Right-handed alpha
Helix 107	AL8	F	516	521	Right-handed alpha
Helix 108	AL9	J	80	87	Right-handed alpha
Helix 109	AM1	J	90	110	Right-handed alpha
Helix 110	AM2	M	50	57	Right-handed alpha
Helix 111	AM3	M	63	76	Right-handed alpha
Helix 112	AM4	M	88	97	Right-handed alpha
Helix 113	AM5	M	100	105	Right-handed alpha
Helix 114	AM6	M	126	143	Right-handed alpha
Helix 115	AM7	M	150	157	Right-handed alpha
Helix 116	AM8	Z	24	30	Right-handed 310
Helix 117	AM9	Z	36	43	Right-handed alpha
Helix 118	AN1	Z	44	46	Right-handed 310
Helix 119	AN2	Z	48	59	Right-handed alpha

There are 47 sheets in PDB entry 7KIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	12	15	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	140	anti-parallel
Strand 3	A	51	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	22	24	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	171	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	124	126	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	130	140	anti-parallel
Strand 4	C	153	158	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	130	140	anti-parallel
Strand 4	C	147	149	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	34	37	anti-parallel
Strand 7	M	22	23	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	498	499	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	204	first strand
Strand 2	C	212	215	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	362	364	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	516	anti-parallel
Strand 3	C	529	531	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	520	first strand
Strand 2	C	523	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	568	572	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	627	first strand
Strand 2	C	972	973	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	652	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	898	anti-parallel
Strand 5	C	735	737	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	717	722	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	750	first strand
Strand 2	C	876	877	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	753	759	first strand
Strand 2	C	867	874	anti-parallel
Strand 3	C	846	854	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	761	762	first strand
Strand 2	C	765	766	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	807	anti-parallel
Strand 3	C	833	834	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	514	anti-parallel
Strand 6	D	440	441	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1135	1138	first strand
Strand 2	D	9	12	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	318	319	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	313	314	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	422	first strand
Strand 2	D	335	337	parallel
Strand 3	D	328	330	anti-parallel
Strand 4	J	6	9	anti-parallel
Strand 5	F	439	441	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	662	664	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1076	first strand
Strand 2	D	1065	1066	anti-parallel
Strand 3	D	1051	1054	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1062	first strand
Strand 2	D	1080	1081	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1085	1086	first strand
Strand 2	D	1112	1113	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	18	first strand
Strand 2	M	8	11	anti-parallel
Strand 3	M	59	60	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	26	27	first strand
Strand 2	M	30	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KIM