Analysis of interatomic Contacts of Structural Units in PDB entry:
7KIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KIO entry

There is 1 chain in PDB entry 7KIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7KIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 25Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
49 69Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
114 127Right-handed alpha
Helix 7
AA7
A
133 139Right-handed alpha
Helix 8
AA8
A
144 146Right-handed 310
Helix 9
AA9
A
157 164Right-handed alpha
Helix 10
AB1
A
178 182Right-handed 310
Helix 11
AB2
A
290 300Right-handed alpha
Helix 12
AB3
A
314 328Right-handed alpha
Helix 13
AB4
A
335 340Right-handed alpha
Helix 14
AB5
A
378 390Right-handed alpha
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There are 3 sheets in PDB entry 7KIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
148 156parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
196 208anti-parallel
Strand 5
A
215 225anti-parallel
Strand 6
A
228 231anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
91 93anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
265 267parallel
Strand 3
A
305 308parallel
Strand 4
A
373 376anti-parallel
Strand 5
A
331 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il