Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KJC entry

There are 2 chains in PDB entry 7KJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 587ILE 976
B
 GLY 587CYS 853
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7KJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
596 605Right-handed alpha
Helix 2
AA2
A
609 611Right-handed 310
Helix 3
AA3
A
653 668Right-handed alpha
Helix 4
AA4
A
700 707Right-handed alpha
Helix 5
AA5
A
712 733Right-handed alpha
Helix 6
AA6
A
741 743Right-handed 310
Helix 7
AA7
A
780 784Right-handed 310
Helix 8
AA8
A
785 791Right-handed alpha
Helix 9
AA9
A
795 812Right-handed alpha
Helix 10
AB1
A
822 833Right-handed alpha
Helix 11
AB2
A
843 854Right-handed alpha
Helix 12
AB3
A
857 861Right-handed 310
Helix 13
AB4
A
863 877Right-handed alpha
Helix 14
AB5
A
878 882Right-handed 310
Helix 15
AB6
A
908 916Right-handed alpha
Helix 16
AB7
A
917 920Right-handed 310
Helix 17
AB8
A
921 928Right-handed alpha
Helix 18
AB9
A
932 937Right-handed alpha
Helix 19
AC1
A
940 947Right-handed alpha
Helix 20
AC2
A
951 970Right-handed alpha
Helix 21
AC3
B
596 605Right-handed alpha
Helix 22
AC4
B
609 611Right-handed 310
Helix 23
AC5
B
653 668Right-handed alpha
Helix 24
AC6
B
700 707Right-handed alpha
Helix 25
AC7
B
712 733Right-handed alpha
Helix 26
AC8
B
741 743Right-handed 310
Helix 27
AC9
B
780 784Right-handed 310
Helix 28
AD1
B
785 791Right-handed alpha
Helix 29
AD2
B
795 812Right-handed alpha
Helix 30
AD3
B
822 833Right-handed alpha
Helix 31
AD4
B
843 854Right-handed alpha
Helix 32
AD5
B
857 861Right-handed 310
Helix 33
AD6
B
863 877Right-handed alpha
Helix 34
AD7
B
878 882Right-handed 310
Helix 35
AD8
B
908 916Right-handed alpha
Helix 36
AD9
B
917 920Right-handed 310
Helix 37
AE1
B
921 928Right-handed alpha
Helix 38
AE2
B
932 937Right-handed alpha
Helix 39
AE3
B
940 947Right-handed alpha
Helix 40
AE4
B
951 965Right-handed alpha
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There are 4 sheets in PDB entry 7KJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 621first strand
Strand 2
A
626 633anti-parallel
Strand 3
A
640 647anti-parallel
Strand 4
A
689 693anti-parallel
Strand 5
A
678 682anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
745 747anti-parallel
Strand 3
A
753 755anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 975first strand
Strand 2
B
613 621anti-parallel
Strand 3
B
626 632anti-parallel
Strand 4
B
641 647anti-parallel
Strand 5
B
689 693anti-parallel
Strand 6
B
678 682anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
698 699first strand
Strand 2
B
745 747anti-parallel
Strand 3
B
753 755anti-parallel
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