Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KJH entry

There are 4 chains in PDB entry 7KJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 120
C	SER 23	SER 341
D	ASN 24	SER 341
B	GLN 1	HIS 126

There are 12 helices in PDB entry 7KJH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	C	31	35	Right-handed 310
Helix 3	AA3	C	106	110	Right-handed alpha
Helix 4	AA4	C	178	183	Right-handed alpha
Helix 5	AA5	C	194	198	Right-handed alpha
Helix 6	AA6	C	285	289	Right-handed alpha
Helix 7	AA7	D	31	35	Right-handed 310
Helix 8	AA8	D	106	110	Right-handed alpha
Helix 9	AA9	D	181	185	Right-handed 310
Helix 10	AB1	D	194	198	Right-handed alpha
Helix 11	AB2	D	285	289	Right-handed alpha
Helix 12	AB3	B	87	91	Right-handed 310

There are 20 sheets in PDB entry 7KJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	114	119	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	46	52	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	114	119	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	70	77	parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	114	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	158	165	parallel
Strand 3	C	138	145	anti-parallel
Strand 4	C	87	89	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	102	105	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	154	155	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	193	first strand
Strand 2	C	170	177	parallel
Strand 3	C	253	259	parallel
Strand 4	C	303	309	anti-parallel
Strand 5	C	294	297	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	249	first strand
Strand 2	C	334	340	parallel
Strand 3	C	319	325	anti-parallel
Strand 4	C	264	267	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	281	284	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	70	77	parallel
Strand 3	D	123	130	anti-parallel
Strand 4	D	114	119	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	66	first strand
Strand 2	D	158	165	parallel
Strand 3	D	138	145	anti-parallel
Strand 4	D	87	89	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	99	first strand
Strand 2	D	102	105	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	154	155	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	193	first strand
Strand 2	D	170	177	parallel
Strand 3	D	253	259	parallel
Strand 4	D	303	309	anti-parallel
Strand 5	D	294	297	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	334	339	parallel
Strand 3	D	319	324	anti-parallel
Strand 4	D	265	267	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	281	284	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	114	119	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	59	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	114	119	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	109	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJH