Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KJI entry

There are 2 chains in PDB entry 7KJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1SER 117
B
 SER 23SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7KJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 64Right-handed 310
Helix 2
AA2
A
88 92Right-handed 310
Helix 3
AA3
B
31 35Right-handed 310
Helix 4
AA4
B
106 110Right-handed alpha
Helix 5
AA5
B
178 183Right-handed alpha
Helix 6
AA6
B
285 289Right-handed alpha
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There are 9 sheets in PDB entry 7KJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
111 115parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
56 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
111 115parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
104 107anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
70 77parallel
Strand 3
B
123 130anti-parallel
Strand 4
B
114 120anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
158 165parallel
Strand 3
B
138 145anti-parallel
Strand 4
B
87 89anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
102 105anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 193first strand
Strand 2
B
170 177parallel
Strand 3
B
253 259parallel
Strand 4
B
303 309anti-parallel
Strand 5
B
294 297anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 249first strand
Strand 2
B
334 340parallel
Strand 3
B
320 323anti-parallel
Strand 4
B
266 267anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
281 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il