Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KJP entry

There are 3 chains in PDB entry 7KJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 48THR 223
B
 GLN 48THR 223
C
 GLN 48THR 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7KJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed alpha
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
138 143Right-handed alpha
Helix 5
AA5
B
53 59Right-handed alpha
Helix 6
AA6
B
86 89Right-handed 310
Helix 7
AA7
B
90 97Right-handed alpha
Helix 8
AA8
C
53 58Right-handed alpha
Helix 9
AA9
C
86 89Right-handed 310
Helix 10
AB1
C
90 100Right-handed alpha
Helix 11
AB2
C
138 145Right-handed alpha
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There are 9 sheets in PDB entry 7KJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
202 210anti-parallel
Strand 3
A
107 114anti-parallel
Strand 4
A
158 159anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
181 186anti-parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
147 151anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
215 216anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 70first strand
Strand 2
B
202 210anti-parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
158 159anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
181 186anti-parallel
Strand 3
B
122 128anti-parallel
Strand 4
B
147 151anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
215 218anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
202 210anti-parallel
Strand 3
C
107 113anti-parallel
Strand 4
C
158 159anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 83first strand
Strand 2
C
182 191anti-parallel
Strand 3
C
120 126anti-parallel
Strand 4
C
147 151anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
215 216anti-parallel
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