Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KJY entry

There are 4 chains in PDB entry 7KJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 347
B	SER 1	LYS 347
C	SER 1	LYS 347
D	SER 1	LYS 347

There are 52 helices in PDB entry 7KJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	52	Right-handed alpha
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	144	149	Right-handed alpha
Helix 5	AA5	A	150	152	Right-handed 310
Helix 6	AA6	A	153	165	Right-handed alpha
Helix 7	AA7	A	180	194	Right-handed alpha
Helix 8	AA8	A	205	214	Right-handed alpha
Helix 9	AA9	A	226	236	Right-handed alpha
Helix 10	AB1	A	248	256	Right-handed alpha
Helix 11	AB2	A	279	286	Right-handed alpha
Helix 12	AB3	A	297	310	Right-handed alpha
Helix 13	AB4	A	324	334	Right-handed alpha
Helix 14	AB5	B	43	52	Right-handed alpha
Helix 15	AB6	B	101	106	Right-handed alpha
Helix 16	AB7	B	107	111	Right-handed 310
Helix 17	AB8	B	144	149	Right-handed alpha
Helix 18	AB9	B	150	152	Right-handed 310
Helix 19	AC1	B	153	165	Right-handed alpha
Helix 20	AC2	B	180	194	Right-handed alpha
Helix 21	AC3	B	205	214	Right-handed alpha
Helix 22	AC4	B	226	236	Right-handed alpha
Helix 23	AC5	B	248	256	Right-handed alpha
Helix 24	AC6	B	279	286	Right-handed alpha
Helix 25	AC7	B	297	310	Right-handed alpha
Helix 26	AC8	B	324	334	Right-handed alpha
Helix 27	AC9	C	43	52	Right-handed alpha
Helix 28	AD1	C	101	106	Right-handed alpha
Helix 29	AD2	C	107	111	Right-handed 310
Helix 30	AD3	C	144	149	Right-handed alpha
Helix 31	AD4	C	150	152	Right-handed 310
Helix 32	AD5	C	153	165	Right-handed alpha
Helix 33	AD6	C	180	194	Right-handed alpha
Helix 34	AD7	C	205	214	Right-handed alpha
Helix 35	AD8	C	226	236	Right-handed alpha
Helix 36	AD9	C	248	256	Right-handed alpha
Helix 37	AE1	C	279	286	Right-handed alpha
Helix 38	AE2	C	297	310	Right-handed alpha
Helix 39	AE3	C	324	334	Right-handed alpha
Helix 40	AE4	D	43	52	Right-handed alpha
Helix 41	AE5	D	101	106	Right-handed alpha
Helix 42	AE6	D	107	111	Right-handed 310
Helix 43	AE7	D	144	149	Right-handed alpha
Helix 44	AE8	D	150	152	Right-handed 310
Helix 45	AE9	D	153	165	Right-handed alpha
Helix 46	AF1	D	180	194	Right-handed alpha
Helix 47	AF2	D	205	214	Right-handed alpha
Helix 48	AF3	D	226	236	Right-handed alpha
Helix 49	AF4	D	248	256	Right-handed alpha
Helix 50	AF5	D	279	286	Right-handed alpha
Helix 51	AF6	D	297	310	Right-handed alpha
Helix 52	AF7	D	324	334	Right-handed alpha

There are 20 sheets in PDB entry 7KJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	5	11	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	32	41	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	87	90	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	32	41	anti-parallel
Strand 3	A	343	344	anti-parallel
Strand 4	A	320	321	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	115	116	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	196	201	parallel
Strand 3	A	172	176	parallel
Strand 4	A	239	244	parallel
Strand 5	A	259	267	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	32	41	anti-parallel
Strand 3	B	67	75	anti-parallel
Strand 4	B	87	90	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	32	41	anti-parallel
Strand 3	B	343	344	anti-parallel
Strand 4	B	320	321	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	115	116	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	196	201	parallel
Strand 3	B	172	176	parallel
Strand 4	B	239	244	parallel
Strand 5	B	259	267	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	5	11	anti-parallel
Strand 3	C	62	63	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	32	41	anti-parallel
Strand 3	C	67	75	anti-parallel
Strand 4	C	87	90	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	32	41	anti-parallel
Strand 3	C	343	344	anti-parallel
Strand 4	C	320	321	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	115	116	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	196	201	parallel
Strand 3	C	172	176	parallel
Strand 4	C	239	244	parallel
Strand 5	C	259	267	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	5	11	anti-parallel
Strand 3	D	62	63	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	32	41	anti-parallel
Strand 3	D	67	75	anti-parallel
Strand 4	D	87	90	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	32	41	anti-parallel
Strand 3	D	343	344	anti-parallel
Strand 4	D	320	321	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	115	116	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	220	first strand
Strand 2	D	196	201	parallel
Strand 3	D	172	176	parallel
Strand 4	D	239	244	parallel
Strand 5	D	259	267	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KJY