Analysis of interatomic Contacts of Structural Units in PDB entry:
7KM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KM6 entry

There are 4 chains in PDB entry 7KM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 MET 0ALA 164
H
 GLU 1HIS 170
l
 MET 0LYS 165
h
 MET 0HIS 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7KM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
85 89Right-handed 310
Helix 2
AA2
L
118 124Right-handed 310
Helix 3
AA3
L
125 164Right-handed alpha
Helix 4
AA4
H
28 32Right-handed 310
Helix 5
AA5
H
87 91Right-handed 310
Helix 6
AA6
H
122 128Right-handed 310
Helix 7
AA7
H
129 169Right-handed alpha
Helix 8
AA8
l
85 89Right-handed 310
Helix 9
AA9
l
118 124Right-handed 310
Helix 10
AB1
l
125 164Right-handed alpha
Helix 11
AB2
h
28 32Right-handed 310
Helix 12
AB3
h
87 91Right-handed 310
Helix 13
AB4
h
122 128Right-handed 310
Helix 14
AB5
h
129 169Right-handed alpha
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There are 14 sheets in PDB entry 7KM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
108 112parallel
Strand 3
L
91 96anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
108 112parallel
Strand 3
L
91 96anti-parallel
Strand 4
L
103 104anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
36 37anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
103 108anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
4 7first strand
Strand 2
l
19 25anti-parallel
Strand 3
l
76 81anti-parallel
Strand 4
l
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
108 112parallel
Strand 3
l
91 96anti-parallel
Strand 4
l
39 44anti-parallel
Strand 5
l
51 55anti-parallel
Strand 6
l
59 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
108 112parallel
Strand 3
l
91 96anti-parallel
Strand 4
l
103 104anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
30 31first strand
Strand 2
l
36 37anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
3 7first strand
Strand 2
h
18 25anti-parallel
Strand 3
h
78 83anti-parallel
Strand 4
h
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
11 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 100anti-parallel
Strand 4
h
34 39anti-parallel
Strand 5
h
45 51anti-parallel
Strand 6
h
58 59anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
11 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 100anti-parallel
Strand 4
h
103 108anti-parallel
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