Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMB entry

There are 2 chains in PDB entry 7KMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	SER 19	ALA 614
G	LEU 335	GLY 526

There are 36 helices in PDB entry 7KMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	20	51	Right-handed alpha
Helix 2	AA2	F	55	82	Right-handed alpha
Helix 3	AA3	F	91	101	Right-handed alpha
Helix 4	AA4	F	109	128	Right-handed alpha
Helix 5	AA5	F	143	154	Right-handed alpha
Helix 6	AA6	F	157	170	Right-handed alpha
Helix 7	AA7	F	172	175	Right-handed 310
Helix 8	AA8	F	176	194	Right-handed alpha
Helix 9	AA9	F	198	204	Right-handed alpha
Helix 10	AB1	F	220	249	Right-handed alpha
Helix 11	AB2	F	265	267	Right-handed 310
Helix 12	AB3	F	275	279	Right-handed 310
Helix 13	AB4	F	293	300	Right-handed alpha
Helix 14	AB5	F	303	319	Right-handed alpha
Helix 15	AB6	F	324	329	Right-handed alpha
Helix 16	AB7	F	365	383	Right-handed alpha
Helix 17	AB8	F	399	413	Right-handed alpha
Helix 18	AB9	F	414	422	Right-handed alpha
Helix 19	AC1	F	432	447	Right-handed alpha
Helix 20	AC2	F	449	466	Right-handed alpha
Helix 21	AC3	F	469	471	Right-handed 310
Helix 22	AC4	F	472	484	Right-handed alpha
Helix 23	AC5	F	498	502	Right-handed 310
Helix 24	AC6	F	503	508	Right-handed alpha
Helix 25	AC7	F	512	523	Right-handed alpha
Helix 26	AC8	F	523	533	Right-handed alpha
Helix 27	AC9	F	547	559	Right-handed alpha
Helix 28	AD1	F	565	572	Right-handed alpha
Helix 29	AD2	F	581	586	Right-handed alpha
Helix 30	AD3	F	588	599	Right-handed alpha
Helix 31	AD4	G	338	343	Right-handed alpha
Helix 32	AD5	G	365	370	Right-handed alpha
Helix 33	AD6	G	385	390	Right-handed alpha
Helix 34	AD7	G	405	410	Right-handed 310
Helix 35	AD8	G	417	422	Right-handed alpha
Helix 36	AD9	G	502	505	Right-handed 310

There are 4 sheets in PDB entry 7KMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	487	488	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	352	first strand
Strand 2	F	355	359	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	356	first strand
Strand 2	G	397	403	anti-parallel
Strand 3	G	507	514	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	378	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMB