Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMF entry

There are 10 chains in PDB entry 7KMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 9	LEU 351
D	SER 9	LEU 351
F	LEU 179	SER 520
E	LEU 179	SER 520
H	ASP 3	TYR 304
G	ASP 3	LEU 305
B	PRO 41	GLU 464
I	PRO 41	SER 466
J	MET 1	ILE 267
K	MET 1	ILE 267

There are128 helices in PDB entry 7KMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	24	Right-handed alpha
Helix 2	AA2	C	30	49	Right-handed alpha
Helix 3	AA3	C	53	72	Right-handed alpha
Helix 4	AA4	C	75	95	Right-handed alpha
Helix 5	AA5	C	128	142	Right-handed alpha
Helix 6	AA6	C	146	153	Right-handed alpha
Helix 7	AA7	C	154	159	Right-handed alpha
Helix 8	AA8	C	171	183	Right-handed alpha
Helix 9	AA9	C	200	210	Right-handed alpha
Helix 10	AB1	C	224	229	Right-handed 310
Helix 11	AB2	C	250	261	Right-handed alpha
Helix 12	AB3	C	290	294	Right-handed 310
Helix 13	AB4	C	296	304	Right-handed 310
Helix 14	AB5	C	317	321	Right-handed 310
Helix 15	AB6	C	332	334	Right-handed 310
Helix 16	AB7	C	335	344	Right-handed alpha
Helix 17	AB8	C	345	349	Right-handed 310
Helix 18	AB9	D	10	25	Right-handed alpha
Helix 19	AC1	D	30	49	Right-handed alpha
Helix 20	AC2	D	53	72	Right-handed alpha
Helix 21	AC3	D	75	93	Right-handed alpha
Helix 22	AC4	D	128	142	Right-handed alpha
Helix 23	AC5	D	146	154	Right-handed alpha
Helix 24	AC6	D	171	181	Right-handed alpha
Helix 25	AC7	D	199	210	Right-handed alpha
Helix 26	AC8	D	250	261	Right-handed alpha
Helix 27	AC9	D	290	294	Right-handed 310
Helix 28	AD1	D	296	305	Right-handed 310
Helix 29	AD2	D	317	321	Right-handed 310
Helix 30	AD3	D	332	334	Right-handed 310
Helix 31	AD4	D	335	342	Right-handed alpha
Helix 32	AD5	D	345	349	Right-handed 310
Helix 33	AD6	F	204	217	Right-handed alpha
Helix 34	AD7	F	221	239	Right-handed alpha
Helix 35	AD8	F	249	267	Right-handed alpha
Helix 36	AD9	F	270	287	Right-handed alpha
Helix 37	AE1	F	295	313	Right-handed alpha
Helix 38	AE2	F	313	326	Right-handed alpha
Helix 39	AE3	F	341	352	Right-handed alpha
Helix 40	AE4	F	368	380	Right-handed alpha
Helix 41	AE5	F	390	395	Right-handed alpha
Helix 42	AE6	F	419	430	Right-handed alpha
Helix 43	AE7	F	439	443	Right-handed 310
Helix 44	AE8	F	459	463	Right-handed 310
Helix 45	AE9	F	511	519	Right-handed alpha
Helix 46	AF1	E	204	217	Right-handed alpha
Helix 47	AF2	E	221	233	Right-handed alpha
Helix 48	AF3	E	233	240	Right-handed alpha
Helix 49	AF4	E	249	267	Right-handed alpha
Helix 50	AF5	E	270	287	Right-handed alpha
Helix 51	AF6	E	293	303	Right-handed alpha
Helix 52	AF7	E	304	312	Right-handed alpha
Helix 53	AF8	E	312	325	Right-handed alpha
Helix 54	AF9	E	370	378	Right-handed alpha
Helix 55	AG1	E	389	392	Right-handed 310
Helix 56	AG2	E	394	398	Right-handed 310
Helix 57	AG3	E	418	430	Right-handed alpha
Helix 58	AG4	E	459	464	Right-handed 310
Helix 59	AG5	E	475	479	Right-handed 310
Helix 60	AG6	E	493	497	Right-handed 310
Helix 61	AG7	E	511	519	Right-handed alpha
Helix 62	AG8	H	4	16	Right-handed alpha
Helix 63	AG9	H	21	35	Right-handed alpha
Helix 64	AH1	H	44	60	Right-handed alpha
Helix 65	AH2	H	62	76	Right-handed alpha
Helix 66	AH3	H	77	80	Right-handed 310
Helix 67	AH4	H	89	103	Right-handed alpha
Helix 68	AH5	H	106	116	Right-handed alpha
Helix 69	AH6	H	117	119	Right-handed 310
Helix 70	AH7	H	131	144	Right-handed alpha
Helix 71	AH8	H	159	169	Right-handed alpha
Helix 72	AH9	H	170	172	Right-handed 310
Helix 73	AI1	H	182	187	Right-handed alpha
Helix 74	AI2	H	211	222	Right-handed alpha
Helix 75	AI3	H	231	235	Right-handed 310
Helix 76	AI4	H	247	252	Right-handed alpha
Helix 77	AI5	H	292	294	Right-handed 310
Helix 78	AI6	H	295	302	Right-handed alpha
Helix 79	AI7	G	4	16	Right-handed alpha
Helix 80	AI8	G	21	35	Right-handed alpha
Helix 81	AI9	G	43	61	Right-handed alpha
Helix 82	AJ1	G	62	76	Right-handed alpha
Helix 83	AJ2	G	76	83	Right-handed alpha
Helix 84	AJ3	G	87	103	Right-handed alpha
Helix 85	AJ4	G	106	116	Right-handed alpha
Helix 86	AJ5	G	117	119	Right-handed 310
Helix 87	AJ6	G	133	143	Right-handed alpha
Helix 88	AJ7	G	159	169	Right-handed alpha
Helix 89	AJ8	G	170	172	Right-handed 310
Helix 90	AJ9	G	182	187	Right-handed alpha
Helix 91	AK1	G	188	190	Right-handed 310
Helix 92	AK2	G	211	222	Right-handed alpha
Helix 93	AK3	G	231	235	Right-handed 310
Helix 94	AK4	G	247	252	Right-handed alpha
Helix 95	AK5	G	277	281	Right-handed 310
Helix 96	AK6	G	292	304	Right-handed alpha
Helix 97	AK7	B	58	63	Right-handed alpha
Helix 98	AK8	B	74	87	Right-handed alpha
Helix 99	AK9	B	98	107	Right-handed alpha
Helix 100	AL1	B	109	113	Right-handed 310
Helix 101	AL2	B	130	139	Right-handed alpha
Helix 102	AL3	B	162	174	Right-handed alpha
Helix 103	AL4	B	253	262	Right-handed alpha
Helix 104	AL5	B	268	277	Right-handed alpha
Helix 105	AL6	B	302	315	Right-handed alpha
Helix 106	AL7	B	318	322	Right-handed 310
Helix 107	AL8	I	64	68	Right-handed 310
Helix 108	AL9	I	74	87	Right-handed alpha
Helix 109	AM1	I	98	108	Right-handed alpha
Helix 110	AM2	I	109	113	Right-handed 310
Helix 111	AM3	I	130	137	Right-handed alpha
Helix 112	AM4	I	162	174	Right-handed alpha
Helix 113	AM5	I	253	263	Right-handed alpha
Helix 114	AM6	I	268	277	Right-handed alpha
Helix 115	AM7	I	302	315	Right-handed alpha
Helix 116	AM8	I	318	326	Right-handed 310
Helix 117	AM9	I	339	341	Right-handed 310
Helix 118	AN1	J	37	47	Right-handed alpha
Helix 119	AN2	J	88	93	Right-handed alpha
Helix 120	AN3	J	113	123	Right-handed alpha
Helix 121	AN4	J	184	190	Right-handed alpha
Helix 122	AN5	J	228	233	Right-handed alpha
Helix 123	AN6	K	37	41	Right-handed alpha
Helix 124	AN7	K	88	93	Right-handed alpha
Helix 125	AN8	K	114	119	Right-handed alpha
Helix 126	AN9	K	184	190	Right-handed alpha
Helix 127	AO1	K	210	217	Right-handed alpha
Helix 128	AO2	K	228	236	Right-handed alpha

There are 34 sheets in PDB entry 7KMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	265	268	parallel
Strand 3	C	231	234	parallel
Strand 4	C	164	167	parallel
Strand 5	C	188	192	parallel
Strand 6	C	215	217	parallel
Strand 7	F	483	485	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	313	316	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	F	383	387	parallel
Strand 3	F	357	362	parallel
Strand 4	F	332	336	parallel
Strand 5	F	400	404	parallel
Strand 6	F	434	437	parallel
Strand 7	F	499	501	parallel
Strand 8	F	506	507	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	325	first strand
Strand 2	D	265	268	parallel
Strand 3	D	231	234	parallel
Strand 4	D	164	167	parallel
Strand 5	D	188	192	parallel
Strand 6	D	213	217	parallel
Strand 7	E	482	484	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	E	384	387	parallel
Strand 3	E	357	362	parallel
Strand 4	E	332	336	parallel
Strand 5	E	400	404	parallel
Strand 6	E	434	437	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	414	417	anti-parallel
Strand 3	F	489	492	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	414	416	anti-parallel
Strand 3	E	490	492	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	500	501	first strand
Strand 2	E	506	507	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	291	first strand
Strand 2	H	283	286	anti-parallel
Strand 3	H	226	228	parallel
Strand 4	H	192	195	parallel
Strand 5	H	123	127	parallel
Strand 6	H	148	153	parallel
Strand 7	H	175	178	parallel
Strand 8	G	267	268	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	200	first strand
Strand 2	H	206	209	anti-parallel
Strand 3	H	273	276	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	178	first strand
Strand 2	G	148	153	parallel
Strand 3	G	123	127	parallel
Strand 4	G	192	195	parallel
Strand 5	G	226	228	parallel
Strand 6	G	283	286	parallel
Strand 7	G	289	291	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	206	209	anti-parallel
Strand 3	G	273	276	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	91	95	parallel
Strand 3	B	44	48	parallel
Strand 4	B	148	151	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	297	299	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	179	187	anti-parallel
Strand 3	B	286	292	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	202	205	anti-parallel
Strand 3	B	239	241	anti-parallel
Strand 4	J	192	197	anti-parallel
Strand 5	J	157	160	anti-parallel
Strand 6	J	167	170	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	J	179	183	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	361	362	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	373	375	parallel
Strand 3	B	390	392	parallel
Strand 4	B	407	408	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	400	404	parallel
Strand 3	B	417	421	parallel
Strand 4	B	436	437	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	413	first strand
Strand 2	B	430	431	parallel
Strand 3	B	448	449	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	124	first strand
Strand 2	I	90	95	parallel
Strand 3	I	44	48	parallel
Strand 4	I	150	151	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	297	299	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	244	245	first strand
Strand 2	I	179	187	anti-parallel
Strand 3	I	286	292	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	217	first strand
Strand 2	I	201	205	anti-parallel
Strand 3	I	239	241	anti-parallel
Strand 4	K	192	197	anti-parallel
Strand 5	K	157	160	anti-parallel
Strand 6	K	167	171	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	223	227	first strand
Strand 2	K	179	183	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	336	337	first strand
Strand 2	I	343	344	anti-parallel
Strand 3	I	361	362	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	373	375	first strand
Strand 2	I	390	392	parallel
Strand 3	I	407	408	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	384	387	first strand
Strand 2	I	400	404	parallel
Strand 3	I	417	419	parallel
Strand 4	I	436	437	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	411	413	first strand
Strand 2	I	429	431	parallel
Strand 3	I	448	449	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	53	first strand
Strand 2	J	3	7	parallel
Strand 3	J	100	104	parallel
Strand 4	J	201	207	anti-parallel
Strand 5	J	128	132	anti-parallel
Strand 6	J	263	266	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	101	103	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	131	first strand
Strand 2	K	263	266	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMF