Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMG entry

There are 6 chains in PDB entry 7KMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	HIS 228
B	ASP 1	CYS 212
C	ASN 334	GLY 526
D	GLN 1	HIS 225
E	ASP 1	CYS 212
F	CYS 336	GLY 526

There are 31 helices in PDB entry 7KMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	65	Right-handed 310
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	102	109	Right-handed 310
Helix 4	AA4	A	168	170	Right-handed 310
Helix 5	AA5	A	199	202	Right-handed 310
Helix 6	AA6	A	213	216	Right-handed 310
Helix 7	AA7	B	79	83	Right-handed 310
Helix 8	AA8	B	121	126	Right-handed alpha
Helix 9	AA9	B	183	187	Right-handed alpha
Helix 10	AB1	C	338	343	Right-handed alpha
Helix 11	AB2	C	349	353	Right-handed 310
Helix 12	AB3	C	364	369	Right-handed alpha
Helix 13	AB4	C	405	410	Right-handed 310
Helix 14	AB5	C	416	422	Right-handed alpha
Helix 15	AB6	C	438	443	Right-handed alpha
Helix 16	AB7	C	502	505	Right-handed 310
Helix 17	AB8	D	87	91	Right-handed 310
Helix 18	AB9	D	102	109	Right-handed 310
Helix 19	AC1	D	168	170	Right-handed 310
Helix 20	AC2	D	199	201	Right-handed 310
Helix 21	AC3	D	213	216	Right-handed 310
Helix 22	AC4	E	79	83	Right-handed 310
Helix 23	AC5	E	121	126	Right-handed alpha
Helix 24	AC6	E	183	188	Right-handed alpha
Helix 25	AC7	F	338	343	Right-handed alpha
Helix 26	AC8	F	349	353	Right-handed 310
Helix 27	AC9	F	364	370	Right-handed alpha
Helix 28	AD1	F	384	389	Right-handed 310
Helix 29	AD2	F	405	410	Right-handed 310
Helix 30	AD3	F	416	422	Right-handed alpha
Helix 31	AD4	F	438	443	Right-handed alpha

There are 28 sheets in PDB entry 7KMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	52	anti-parallel
Strand 6	A	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	198	anti-parallel
Strand 4	B	201	208	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	112	115	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	181	182	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	217	222	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	173	182	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	191	198	anti-parallel
Strand 4	E	201	208	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	403	anti-parallel
Strand 3	F	507	516	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	380	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel
Strand 3	F	391	392	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMG