Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMM entry

There are 4 chains in PDB entry 7KMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	GLN 114
A	ASN 116	TRP 638
B	VAL 24	GLN 114
B	ASN 116	TRP 638

There are 31 helices in PDB entry 7KMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	119	Right-handed alpha
Helix 2	AA2	A	120	124	Right-handed 310
Helix 3	AA3	A	126	134	Right-handed alpha
Helix 4	AA4	A	165	170	Right-handed alpha
Helix 5	AA5	A	173	188	Right-handed alpha
Helix 6	AA6	A	202	207	Right-handed 310
Helix 7	AA7	A	209	213	Right-handed 310
Helix 8	AA8	A	398	402	Right-handed 310
Helix 9	AA9	A	404	411	Right-handed alpha
Helix 10	AB1	A	412	415	Right-handed 310
Helix 11	AB2	A	427	431	Right-handed 310
Helix 12	AB3	A	438	454	Right-handed alpha
Helix 13	AB4	A	479	491	Right-handed alpha
Helix 14	AB5	A	492	494	Right-handed 310
Helix 15	AB6	A	516	531	Right-handed alpha
Helix 16	AB7	A	568	570	Right-handed 310
Helix 17	AB8	B	114	119	Right-handed alpha
Helix 18	AB9	B	120	124	Right-handed 310
Helix 19	AC1	B	126	133	Right-handed alpha
Helix 20	AC2	B	165	170	Right-handed alpha
Helix 21	AC3	B	173	188	Right-handed alpha
Helix 22	AC4	B	202	207	Right-handed 310
Helix 23	AC5	B	208	213	Right-handed alpha
Helix 24	AC6	B	398	402	Right-handed 310
Helix 25	AC7	B	404	411	Right-handed alpha
Helix 26	AC8	B	412	415	Right-handed 310
Helix 27	AC9	B	427	431	Right-handed 310
Helix 28	AD1	B	438	455	Right-handed alpha
Helix 29	AD2	B	479	491	Right-handed alpha
Helix 30	AD3	B	492	494	Right-handed 310
Helix 31	AD4	B	516	531	Right-handed alpha

There are 12 sheets in PDB entry 7KMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	97	113	parallel
Strand 3	A	191	197	parallel
Strand 4	A	136	143	parallel
Strand 5	A	161	164	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	84	92	anti-parallel
Strand 4	A	97	113	anti-parallel
Strand 5	A	421	425	parallel
Strand 6	A	461	464	parallel
Strand 7	A	497	500	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	73	78	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	549	first strand
Strand 2	A	552	558	anti-parallel
Strand 3	A	595	599	anti-parallel
Strand 4	A	588	592	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	622	624	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	575	578	anti-parallel
Strand 3	A	608	611	anti-parallel
Strand 4	A	633	634	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	96	113	parallel
Strand 3	B	191	197	parallel
Strand 4	B	136	143	parallel
Strand 5	B	161	164	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	67	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	84	93	anti-parallel
Strand 4	B	96	113	anti-parallel
Strand 5	B	421	425	parallel
Strand 6	B	461	464	parallel
Strand 7	B	497	500	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	73	78	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	549	first strand
Strand 2	B	552	558	anti-parallel
Strand 3	B	595	599	anti-parallel
Strand 4	B	588	592	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	622	624	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	586	first strand
Strand 2	B	575	579	anti-parallel
Strand 3	B	606	611	anti-parallel
Strand 4	B	633	634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMM