Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KMO entry

There is 1 chain in PDB entry 7KMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 75LYS 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7KMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 115Right-handed 310
Helix 2
AA2
A
116 124Right-handed alpha
Helix 3
AA3
A
134 138Right-handed alpha
Helix 4
AA4
A
146 160Right-handed alpha
Helix 5
AA5
A
180 185Right-handed alpha
Helix 6
AA6
A
208 230Right-handed alpha
Helix 7
AA7
A
254 263Right-handed alpha
Helix 8
AA8
A
266 273Right-handed alpha
Helix 9
AA9
A
279 285Right-handed alpha
Helix 10
AB1
A
287 312Right-handed alpha
Helix 11
AB2
A
343 351Right-handed alpha
Helix 12
AB3
A
365 377Right-handed alpha
Helix 13
AB4
A
391 396Right-handed 310
Helix 14
AB5
A
397 403Right-handed alpha
Helix 15
AB6
A
430 446Right-handed alpha
Helix 16
AB7
A
447 457Right-handed alpha
Helix 17
AB8
A
532 536Right-handed 310
Helix 18
AB9
A
561 566Right-handed alpha
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There are 6 sheets in PDB entry 7KMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
94 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 242first strand
Strand 2
A
162 172parallel
Strand 3
A
127 133parallel
Strand 4
A
98 102parallel
Strand 5
A
408 412parallel
Strand 6
A
384 385parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 204anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
356 361parallel
Strand 3
A
387 388parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 464first strand
Strand 2
A
506 513anti-parallel
Strand 3
A
516 522anti-parallel
Strand 4
A
576 583anti-parallel
Strand 5
A
538 549anti-parallel
Strand 6
A
552 558anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 475first strand
Strand 2
A
480 486anti-parallel
Strand 3
A
524 530anti-parallel
Strand 4
A
568 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il