Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMP entry

There is 1 chain in PDB entry 7KMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 38	ARG 957

There are 24 helices in PDB entry 7KMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	265	272	Right-handed 310
Helix 2	AA2	A	273	277	Right-handed 310
Helix 3	AA3	A	368	373	Right-handed alpha
Helix 4	AA4	A	394	407	Right-handed alpha
Helix 5	AA5	A	413	417	Right-handed 310
Helix 6	AA6	A	428	442	Right-handed alpha
Helix 7	AA7	A	473	484	Right-handed alpha
Helix 8	AA8	A	500	509	Right-handed alpha
Helix 9	AA9	A	514	519	Right-handed alpha
Helix 10	AB1	A	538	553	Right-handed alpha
Helix 11	AB2	A	554	557	Right-handed 310
Helix 12	AB3	A	575	582	Right-handed alpha
Helix 13	AB4	A	598	614	Right-handed alpha
Helix 14	AB5	A	628	632	Right-handed 310
Helix 15	AB6	A	644	662	Right-handed alpha
Helix 16	AB7	A	676	681	Right-handed alpha
Helix 17	AB8	A	683	685	Right-handed 310
Helix 18	AB9	A	686	702	Right-handed alpha
Helix 19	AC1	A	717	722	Right-handed alpha
Helix 20	AC2	A	726	742	Right-handed alpha
Helix 21	AC3	A	742	756	Right-handed alpha
Helix 22	AC4	A	763	768	Right-handed alpha
Helix 23	AC5	A	771	775	Right-handed 310
Helix 24	AC6	A	882	888	Right-handed 310

There are 12 sheets in PDB entry 7KMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	58	64	anti-parallel
Strand 4	A	67	72	anti-parallel
Strand 5	A	385	391	anti-parallel
Strand 6	A	205	209	anti-parallel
Strand 7	A	198	201	anti-parallel
Strand 8	A	167	169	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	103	107	anti-parallel
Strand 3	A	112	116	anti-parallel
Strand 4	A	122	125	anti-parallel
Strand 5	A	131	147	anti-parallel
Strand 6	A	150	159	anti-parallel
Strand 7	A	375	382	anti-parallel
Strand 8	A	215	217	anti-parallel
Strand 9	A	185	187	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	261	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	299	307	anti-parallel
Strand 4	A	331	339	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	285	295	anti-parallel
Strand 3	A	242	248	anti-parallel
Strand 4	A	251	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	285	295	anti-parallel
Strand 3	A	345	353	anti-parallel
Strand 4	A	309	315	anti-parallel
Strand 5	A	318	325	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	A	634	637	parallel
Strand 3	A	620	622	parallel
Strand 4	A	560	563	parallel
Strand 5	A	487	492	parallel
Strand 6	A	448	451	parallel
Strand 7	A	419	421	parallel
Strand 8	A	707	709	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	532	533	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	762	first strand
Strand 2	A	781	783	anti-parallel
Strand 3	A	787	789	anti-parallel
Strand 4	A	836	839	anti-parallel
Strand 5	A	810	812	anti-parallel
Strand 6	A	818	819	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	804	first strand
Strand 2	A	823	828	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	846	first strand
Strand 2	A	861	866	anti-parallel
Strand 3	A	920	927	parallel
Strand 4	A	943	947	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	871	877	first strand
Strand 2	A	891	898	anti-parallel
Strand 3	A	903	906	anti-parallel
Strand 4	A	952	955	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMP