Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMQ entry

There are 2 chains in PDB entry 7KMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 36	GLN 790
B	LEU 36	THR 789

There are 51 helices in PDB entry 7KMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	44	Right-handed 310
Helix 2	AA2	A	55	59	Right-handed 310
Helix 3	AA3	A	99	113	Right-handed alpha
Helix 4	AA4	A	115	127	Right-handed alpha
Helix 5	AA5	A	289	303	Right-handed alpha
Helix 6	AA6	A	305	322	Right-handed alpha
Helix 7	AA7	A	331	336	Right-handed 310
Helix 8	AA8	A	337	345	Right-handed alpha
Helix 9	AA9	A	346	348	Right-handed 310
Helix 10	AB1	A	351	369	Right-handed alpha
Helix 11	AB2	A	388	393	Right-handed 310
Helix 12	AB3	A	398	405	Right-handed alpha
Helix 13	AB4	A	406	408	Right-handed 310
Helix 14	AB5	A	412	415	Right-handed 310
Helix 15	AB6	A	416	439	Right-handed alpha
Helix 16	AB7	A	460	465	Right-handed alpha
Helix 17	AB8	A	468	485	Right-handed alpha
Helix 18	AB9	A	486	508	Right-handed alpha
Helix 19	AC1	A	539	561	Right-handed alpha
Helix 20	AC2	A	567	576	Right-handed alpha
Helix 21	AC3	A	595	599	Right-handed 310
Helix 22	AC4	A	607	611	Right-handed 310
Helix 23	AC5	A	624	639	Right-handed alpha
Helix 24	AC6	A	643	657	Right-handed alpha
Helix 25	AC7	A	659	671	Right-handed alpha
Helix 26	AC8	A	689	703	Right-handed alpha
Helix 27	AC9	B	42	44	Right-handed 310
Helix 28	AD1	B	55	59	Right-handed 310
Helix 29	AD2	B	99	113	Right-handed alpha
Helix 30	AD3	B	115	127	Right-handed alpha
Helix 31	AD4	B	289	303	Right-handed alpha
Helix 32	AD5	B	305	322	Right-handed alpha
Helix 33	AD6	B	331	336	Right-handed 310
Helix 34	AD7	B	337	345	Right-handed alpha
Helix 35	AD8	B	346	348	Right-handed 310
Helix 36	AD9	B	351	369	Right-handed alpha
Helix 37	AE1	B	388	393	Right-handed 310
Helix 38	AE2	B	398	405	Right-handed alpha
Helix 39	AE3	B	412	415	Right-handed 310
Helix 40	AE4	B	416	438	Right-handed alpha
Helix 41	AE5	B	460	465	Right-handed alpha
Helix 42	AE6	B	468	485	Right-handed alpha
Helix 43	AE7	B	486	508	Right-handed alpha
Helix 44	AE8	B	539	561	Right-handed alpha
Helix 45	AE9	B	563	576	Right-handed alpha
Helix 46	AF1	B	595	599	Right-handed 310
Helix 47	AF2	B	607	611	Right-handed 310
Helix 48	AF3	B	624	639	Right-handed alpha
Helix 49	AF4	B	643	657	Right-handed alpha
Helix 50	AF5	B	659	671	Right-handed alpha
Helix 51	AF6	B	689	703	Right-handed alpha

There are 14 sheets in PDB entry 7KMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	153	161	anti-parallel
Strand 3	A	166	173	anti-parallel
Strand 4	A	176	185	anti-parallel
Strand 5	A	190	197	anti-parallel
Strand 6	A	261	278	anti-parallel
Strand 7	A	203	210	anti-parallel
Strand 8	A	141	147	anti-parallel
Strand 9	A	77	84	anti-parallel
Strand 10	A	67	71	anti-parallel
Strand 11	A	60	63	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	153	161	anti-parallel
Strand 3	A	166	173	anti-parallel
Strand 4	A	176	185	anti-parallel
Strand 5	A	190	197	anti-parallel
Strand 6	A	261	278	anti-parallel
Strand 7	A	241	258	anti-parallel
Strand 8	A	223	229	anti-parallel
Strand 9	A	216	220	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	A	735	742	anti-parallel
Strand 4	A	745	753	anti-parallel
Strand 5	A	777	783	anti-parallel
Strand 6	A	786	789	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	448	449	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	535	536	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	707	first strand
Strand 2	A	710	713	anti-parallel
Strand 3	A	757	763	parallel
Strand 4	A	766	772	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	153	161	anti-parallel
Strand 3	B	166	173	anti-parallel
Strand 4	B	176	185	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	269	278	anti-parallel
Strand 7	B	241	251	anti-parallel
Strand 8	B	223	229	anti-parallel
Strand 9	B	216	220	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	67	71	anti-parallel
Strand 3	B	77	84	anti-parallel
Strand 4	B	141	147	anti-parallel
Strand 5	B	203	210	anti-parallel
Strand 6	B	261	267	anti-parallel
Strand 7	B	254	258	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	724	731	anti-parallel
Strand 3	B	735	742	anti-parallel
Strand 4	B	745	753	anti-parallel
Strand 5	B	776	783	anti-parallel
Strand 6	B	786	788	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	448	449	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	517	518	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	523	first strand
Strand 2	B	535	536	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	707	first strand
Strand 2	B	710	713	anti-parallel
Strand 3	B	757	763	parallel
Strand 4	B	766	772	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMQ