Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMT entry

There are 9 chains in PDB entry 7KMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ALA 2	GLN 220
J	ILE 41	PHE 282
G	GLY 2	VAL 157
I	SER 9	ILE 190
F	SER 9	ILE 190
E	LEU 37	GLN 263
K	PRO 2	SER 174
A	GLU 4	THR 199
B	PHE 3	ASN 674

There are 73 helices in PDB entry 7KMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	29	50	Right-handed alpha
Helix 2	AA2	H	170	190	Right-handed alpha
Helix 3	AA3	H	204	220	Right-handed alpha
Helix 4	AA4	J	59	76	Right-handed alpha
Helix 5	AA5	J	79	107	Right-handed alpha
Helix 6	AA6	J	161	165	Right-handed 310
Helix 7	AA7	J	175	186	Right-handed alpha
Helix 8	AA8	J	186	192	Right-handed alpha
Helix 9	AA9	J	226	229	Right-handed 310
Helix 10	AB1	J	230	245	Right-handed alpha
Helix 11	AB2	J	271	281	Right-handed alpha
Helix 12	AB3	G	36	58	Right-handed alpha
Helix 13	AB4	G	99	110	Right-handed alpha
Helix 14	AB5	G	110	115	Right-handed alpha
Helix 15	AB6	G	128	133	Right-handed alpha
Helix 16	AB7	G	142	154	Right-handed alpha
Helix 17	AB8	G	155	157	Right-handed 310
Helix 18	AB9	I	10	21	Right-handed alpha
Helix 19	AC1	I	27	45	Right-handed alpha
Helix 20	AC2	I	48	76	Right-handed alpha
Helix 21	AC3	I	82	98	Right-handed alpha
Helix 22	AC4	I	109	112	Right-handed 310
Helix 23	AC5	I	122	126	Right-handed 310
Helix 24	AC6	I	133	137	Right-handed 310
Helix 25	AC7	I	142	154	Right-handed alpha
Helix 26	AC8	I	166	170	Right-handed 310
Helix 27	AC9	F	10	21	Right-handed alpha
Helix 28	AD1	F	26	45	Right-handed alpha
Helix 29	AD2	F	48	75	Right-handed alpha
Helix 30	AD3	F	82	93	Right-handed alpha
Helix 31	AD4	F	93	99	Right-handed alpha
Helix 32	AD5	F	109	112	Right-handed 310
Helix 33	AD6	F	131	136	Right-handed alpha
Helix 34	AD7	F	141	155	Right-handed alpha
Helix 35	AD8	F	166	170	Right-handed 310
Helix 36	AD9	E	42	63	Right-handed alpha
Helix 37	AE1	E	101	111	Right-handed alpha
Helix 38	AE2	E	112	132	Right-handed alpha
Helix 39	AE3	E	158	163	Right-handed alpha
Helix 40	AE4	E	163	169	Right-handed alpha
Helix 41	AE5	E	203	212	Right-handed alpha
Helix 42	AE6	E	215	227	Right-handed alpha
Helix 43	AE7	K	33	53	Right-handed alpha
Helix 44	AE8	K	126	146	Right-handed alpha
Helix 45	AE9	K	158	173	Right-handed alpha
Helix 46	AF1	A	20	29	Right-handed alpha
Helix 47	AF2	A	69	77	Right-handed alpha
Helix 48	AF3	A	94	110	Right-handed alpha
Helix 49	AF4	A	133	143	Right-handed alpha
Helix 50	AF5	A	157	174	Right-handed alpha
Helix 51	AF6	B	5	10	Right-handed alpha
Helix 52	AF7	B	25	35	Right-handed alpha
Helix 53	AF8	B	46	55	Right-handed alpha
Helix 54	AF9	B	59	66	Right-handed alpha
Helix 55	AG1	B	154	173	Right-handed alpha
Helix 56	AG2	B	181	196	Right-handed alpha
Helix 57	AG3	B	205	208	Right-handed 310
Helix 58	AG4	B	224	236	Right-handed alpha
Helix 59	AG5	B	268	284	Right-handed alpha
Helix 60	AG6	B	315	323	Right-handed alpha
Helix 61	AG7	B	332	350	Right-handed alpha
Helix 62	AG8	B	351	365	Right-handed alpha
Helix 63	AG9	B	414	427	Right-handed alpha
Helix 64	AH1	B	429	440	Right-handed alpha
Helix 65	AH2	B	449	465	Right-handed alpha
Helix 66	AH3	B	471	478	Right-handed alpha
Helix 67	AH4	B	478	497	Right-handed alpha
Helix 68	AH5	B	518	530	Right-handed alpha
Helix 69	AH6	B	533	550	Right-handed alpha
Helix 70	AH7	B	555	571	Right-handed alpha
Helix 71	AH8	B	618	636	Right-handed alpha
Helix 72	AH9	B	638	655	Right-handed alpha
Helix 73	AI1	B	664	673	Right-handed alpha

There are 9 sheets in PDB entry 7KMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	20	first strand
Strand 2	H	3	9	anti-parallel
Strand 3	H	139	144	anti-parallel
Strand 4	H	127	133	anti-parallel
Strand 5	H	119	124	anti-parallel
Strand 6	G	67	72	anti-parallel
Strand 7	G	76	79	anti-parallel
Strand 8	G	87	92	anti-parallel
Strand 9	G	6	10	anti-parallel
Strand 10	G	14	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	58	first strand
Strand 2	I	24	26	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	251	254	first strand
Strand 2	J	264	269	anti-parallel
Strand 3	J	208	213	anti-parallel
Strand 4	J	198	201	anti-parallel
Strand 5	A	196	197	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	105	first strand
Strand 2	I	114	118	anti-parallel
Strand 3	I	175	183	anti-parallel
Strand 4	I	157	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	106	first strand
Strand 2	F	114	118	anti-parallel
Strand 3	F	175	183	anti-parallel
Strand 4	F	157	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	184	188	anti-parallel
Strand 3	E	258	262	anti-parallel
Strand 4	E	239	241	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	18	first strand
Strand 2	K	4	8	anti-parallel
Strand 3	K	110	114	anti-parallel
Strand 4	K	100	104	anti-parallel
Strand 5	K	90	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	55	63	anti-parallel
Strand 3	A	7	15	parallel
Strand 4	A	83	89	parallel
Strand 5	A	115	121	parallel
Strand 6	A	147	149	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	38	41	parallel
Strand 4	B	210	218	parallel
Strand 5	B	255	262	parallel
Strand 6	B	287	292	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMT