Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KMW entry

There are 4 chains in PDB entry 7KMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 21	ARG 249
B	SER 27	ARG 249
C	GLY 29	ARG 249
D	GLY 26	ARG 249

There are 43 helices in PDB entry 7KMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	52	Right-handed 310
Helix 2	AA2	A	60	71	Right-handed alpha
Helix 3	AA3	A	82	84	Right-handed 310
Helix 4	AA4	A	85	93	Right-handed alpha
Helix 5	AA5	A	106	116	Right-handed alpha
Helix 6	AA6	A	135	148	Right-handed alpha
Helix 7	AA7	A	177	179	Right-handed 310
Helix 8	AA8	A	192	203	Right-handed alpha
Helix 9	AA9	A	204	206	Right-handed 310
Helix 10	AB1	A	210	218	Right-handed alpha
Helix 11	AB2	A	228	232	Right-handed 310
Helix 12	AB3	A	236	248	Right-handed alpha
Helix 13	AB4	B	49	52	Right-handed 310
Helix 14	AB5	B	60	71	Right-handed alpha
Helix 15	AB6	B	82	84	Right-handed 310
Helix 16	AB7	B	85	92	Right-handed alpha
Helix 17	AB8	B	105	116	Right-handed alpha
Helix 18	AB9	B	135	148	Right-handed alpha
Helix 19	AC1	B	177	179	Right-handed 310
Helix 20	AC2	B	192	202	Right-handed alpha
Helix 21	AC3	B	210	218	Right-handed alpha
Helix 22	AC4	B	228	232	Right-handed 310
Helix 23	AC5	B	236	248	Right-handed alpha
Helix 24	AC6	C	60	71	Right-handed alpha
Helix 25	AC7	C	82	84	Right-handed 310
Helix 26	AC8	C	85	93	Right-handed alpha
Helix 27	AC9	C	105	116	Right-handed alpha
Helix 28	AD1	C	135	148	Right-handed alpha
Helix 29	AD2	C	177	179	Right-handed 310
Helix 30	AD3	C	192	202	Right-handed alpha
Helix 31	AD4	C	210	219	Right-handed alpha
Helix 32	AD5	C	228	232	Right-handed 310
Helix 33	AD6	C	236	249	Right-handed alpha
Helix 34	AD7	D	60	71	Right-handed alpha
Helix 35	AD8	D	82	84	Right-handed 310
Helix 36	AD9	D	85	93	Right-handed alpha
Helix 37	AE1	D	105	116	Right-handed alpha
Helix 38	AE2	D	135	148	Right-handed alpha
Helix 39	AE3	D	177	179	Right-handed 310
Helix 40	AE4	D	192	203	Right-handed alpha
Helix 41	AE5	D	210	218	Right-handed alpha
Helix 42	AE6	D	228	232	Right-handed 310
Helix 43	AE7	D	236	249	Right-handed alpha

There are 12 sheets in PDB entry 7KMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	76	81	parallel
Strand 3	A	31	36	parallel
Strand 4	A	123	126	parallel
Strand 5	A	188	191	anti-parallel
Strand 6	A	152	158	anti-parallel
Strand 7	A	223	226	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	76	81	parallel
Strand 3	A	31	36	parallel
Strand 4	A	123	126	parallel
Strand 5	A	188	191	anti-parallel
Strand 6	A	152	158	anti-parallel
Strand 7	A	181	184	anti-parallel
Strand 8	B	162	166	anti-parallel
Strand 9	B	172	174	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	58	59	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	B	181	184	anti-parallel
Strand 4	B	152	158	anti-parallel
Strand 5	B	188	191	anti-parallel
Strand 6	B	123	126	anti-parallel
Strand 7	B	31	36	parallel
Strand 8	B	76	81	parallel
Strand 9	B	98	101	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	B	181	184	anti-parallel
Strand 4	B	152	158	anti-parallel
Strand 5	B	223	226	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	58	59	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	76	81	parallel
Strand 3	C	31	36	parallel
Strand 4	C	123	126	parallel
Strand 5	C	188	191	anti-parallel
Strand 6	C	152	157	anti-parallel
Strand 7	C	223	226	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	76	81	parallel
Strand 3	C	31	36	parallel
Strand 4	C	123	126	parallel
Strand 5	C	188	191	anti-parallel
Strand 6	C	152	157	anti-parallel
Strand 7	C	181	184	anti-parallel
Strand 8	D	163	166	anti-parallel
Strand 9	D	172	174	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	58	59	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	D	181	184	anti-parallel
Strand 4	D	152	158	anti-parallel
Strand 5	D	188	191	anti-parallel
Strand 6	D	123	126	anti-parallel
Strand 7	D	31	36	parallel
Strand 8	D	76	81	parallel
Strand 9	D	97	101	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	D	181	184	anti-parallel
Strand 4	D	152	158	anti-parallel
Strand 5	D	223	226	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KMW