Analysis of interatomic Contacts of Structural Units in PDB entry:
7KO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KO2 entry

There are 3 chains in PDB entry 7KO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ALA 602
B	GLY 2	GLN 605
C	GLY 2	LYS 124

There are 81 helices in PDB entry 7KO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	57	Right-handed alpha
Helix 2	AA2	A	69	72	Right-handed 310
Helix 3	AA3	A	79	87	Right-handed alpha
Helix 4	AA4	A	111	132	Right-handed alpha
Helix 5	AA5	A	147	161	Right-handed alpha
Helix 6	AA6	A	171	181	Right-handed alpha
Helix 7	AA7	A	228	249	Right-handed alpha
Helix 8	AA8	A	251	254	Right-handed 310
Helix 9	AA9	A	255	273	Right-handed alpha
Helix 10	AB1	A	302	328	Right-handed alpha
Helix 11	AB2	A	330	334	Right-handed 310
Helix 12	AB3	A	341	345	Right-handed 310
Helix 13	AB4	A	346	358	Right-handed alpha
Helix 14	AB5	A	369	384	Right-handed alpha
Helix 15	AB6	A	447	451	Right-handed 310
Helix 16	AB7	A	508	554	Right-handed alpha
Helix 17	AB8	A	555	557	Right-handed 310
Helix 18	AB9	A	558	578	Right-handed alpha
Helix 19	AC1	A	580	595	Right-handed alpha
Helix 20	AC2	A	595	602	Right-handed alpha
Helix 21	AC3	B	51	58	Right-handed alpha
Helix 22	AC4	B	69	72	Right-handed 310
Helix 23	AC5	B	79	87	Right-handed alpha
Helix 24	AC6	B	111	132	Right-handed alpha
Helix 25	AC7	B	147	161	Right-handed alpha
Helix 26	AC8	B	171	181	Right-handed alpha
Helix 27	AC9	B	228	249	Right-handed alpha
Helix 28	AD1	B	251	254	Right-handed 310
Helix 29	AD2	B	255	273	Right-handed alpha
Helix 30	AD3	B	302	316	Right-handed alpha
Helix 31	AD4	B	316	328	Right-handed alpha
Helix 32	AD5	B	330	334	Right-handed 310
Helix 33	AD6	B	341	345	Right-handed 310
Helix 34	AD7	B	346	358	Right-handed alpha
Helix 35	AD8	B	369	384	Right-handed alpha
Helix 36	AD9	B	447	451	Right-handed 310
Helix 37	AE1	B	508	554	Right-handed alpha
Helix 38	AE2	B	555	557	Right-handed 310
Helix 39	AE3	B	558	578	Right-handed alpha
Helix 40	AE4	B	580	595	Right-handed alpha
Helix 41	AE5	B	595	603	Right-handed alpha
Helix 42	AE6	C	51	58	Right-handed alpha
Helix 43	AE7	C	68	72	Right-handed 310
Helix 44	AE8	C	79	87	Right-handed alpha
Helix 45	AE9	C	111	132	Right-handed alpha
Helix 46	AF1	C	147	161	Right-handed alpha
Helix 47	AF2	C	171	180	Right-handed alpha
Helix 48	AF3	C	228	249	Right-handed alpha
Helix 49	AF4	C	251	254	Right-handed 310
Helix 50	AF5	C	255	273	Right-handed alpha
Helix 51	AF6	C	302	327	Right-handed alpha
Helix 52	AF7	C	330	334	Right-handed 310
Helix 53	AF8	C	341	345	Right-handed 310
Helix 54	AF9	C	346	358	Right-handed alpha
Helix 55	AG1	C	369	384	Right-handed alpha
Helix 56	AG2	C	447	451	Right-handed 310
Helix 57	AG3	C	508	554	Right-handed alpha
Helix 58	AG4	C	555	557	Right-handed 310
Helix 59	AG5	C	558	578	Right-handed alpha
Helix 60	AG6	C	580	595	Right-handed alpha
Helix 61	AG7	C	595	603	Right-handed alpha
Helix 62	AG8	D	51	58	Right-handed alpha
Helix 63	AG9	D	69	72	Right-handed 310
Helix 64	AH1	D	79	87	Right-handed alpha
Helix 65	AH2	D	111	132	Right-handed alpha
Helix 66	AH3	D	147	161	Right-handed alpha
Helix 67	AH4	D	171	180	Right-handed alpha
Helix 68	AH5	D	228	249	Right-handed alpha
Helix 69	AH6	D	251	254	Right-handed 310
Helix 70	AH7	D	255	273	Right-handed alpha
Helix 71	AH8	D	302	328	Right-handed alpha
Helix 72	AH9	D	330	334	Right-handed 310
Helix 73	AI1	D	341	345	Right-handed 310
Helix 74	AI2	D	346	358	Right-handed alpha
Helix 75	AI3	D	369	384	Right-handed alpha
Helix 76	AI4	D	447	451	Right-handed 310
Helix 77	AI5	D	508	554	Right-handed alpha
Helix 78	AI6	D	555	557	Right-handed 310
Helix 79	AI7	D	558	578	Right-handed alpha
Helix 80	AI8	D	580	595	Right-handed alpha
Helix 81	AI9	D	595	604	Right-handed alpha

There are 32 sheets in PDB entry 7KO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	36	37	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	137	142	parallel
Strand 5	A	164	170	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	65	67	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	101	105	anti-parallel
Strand 3	A	108	110	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	188	195	parallel
Strand 3	A	200	210	anti-parallel
Strand 4	A	213	224	anti-parallel
Strand 5	A	389	394	parallel
Strand 6	A	417	418	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	289	first strand
Strand 2	A	292	301	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	412	first strand
Strand 2	A	399	403	anti-parallel
Strand 3	A	435	442	anti-parallel
Strand 4	A	452	460	anti-parallel
Strand 5	A	499	502	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	426	first strand
Strand 2	A	472	478	anti-parallel
Strand 3	A	484	490	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	36	37	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	B	137	142	parallel
Strand 5	B	164	170	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	65	67	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	108	110	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	188	195	parallel
Strand 3	B	200	210	anti-parallel
Strand 4	B	213	224	anti-parallel
Strand 5	B	389	392	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	296	301	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	412	first strand
Strand 2	B	399	403	anti-parallel
Strand 3	B	435	442	anti-parallel
Strand 4	B	452	460	anti-parallel
Strand 5	B	499	502	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	426	first strand
Strand 2	B	472	478	anti-parallel
Strand 3	B	484	490	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	36	37	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	4	8	anti-parallel
Strand 4	C	137	142	parallel
Strand 5	C	164	170	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	40	42	anti-parallel
Strand 3	C	65	66	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	95	first strand
Strand 2	C	101	105	anti-parallel
Strand 3	C	108	110	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	340	first strand
Strand 2	C	189	195	parallel
Strand 3	C	200	210	anti-parallel
Strand 4	C	213	224	anti-parallel
Strand 5	C	389	394	parallel
Strand 6	C	417	418	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	288	first strand
Strand 2	C	293	301	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	412	first strand
Strand 2	C	399	403	anti-parallel
Strand 3	C	435	442	anti-parallel
Strand 4	C	452	460	anti-parallel
Strand 5	C	500	502	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	472	478	anti-parallel
Strand 3	C	484	490	anti-parallel
Strand 4	C	496	497	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	13	20	anti-parallel
Strand 3	D	36	37	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	13	20	anti-parallel
Strand 3	D	4	9	anti-parallel
Strand 4	D	137	142	parallel
Strand 5	D	164	170	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	39	42	anti-parallel
Strand 3	D	65	67	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	108	110	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	340	first strand
Strand 2	D	188	195	parallel
Strand 3	D	200	210	anti-parallel
Strand 4	D	213	224	anti-parallel
Strand 5	D	389	392	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	289	first strand
Strand 2	D	292	301	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	412	first strand
Strand 2	D	399	403	anti-parallel
Strand 3	D	435	442	anti-parallel
Strand 4	D	452	460	anti-parallel
Strand 5	D	500	502	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	426	first strand
Strand 2	D	472	478	anti-parallel
Strand 3	D	484	490	anti-parallel
Strand 4	D	496	497	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KO2