Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KOE entry

There are 8 chains in PDB entry 7KOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	GLY 281
B	MET 286	VAL 621
C	MET 1	ARG 438
D	MET 439	GLY 530
E	HIS 0	GLY 281
F	MET 286	VAL 621
G	MET 1	ARG 438
H	MET 439	GLY 530

There are 88 helices in PDB entry 7KOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	63	65	Right-handed 310
Helix 3	AA3	A	66	75	Right-handed alpha
Helix 4	AA4	A	93	109	Right-handed alpha
Helix 5	AA5	A	131	140	Right-handed alpha
Helix 6	AA6	A	195	204	Right-handed alpha
Helix 7	AA7	A	211	216	Right-handed alpha
Helix 8	AA8	A	253	264	Right-handed alpha
Helix 9	AA9	A	266	272	Right-handed 310
Helix 10	AB1	B	305	319	Right-handed alpha
Helix 11	AB2	B	335	346	Right-handed alpha
Helix 12	AB3	B	355	359	Right-handed 310
Helix 13	AB4	B	362	370	Right-handed alpha
Helix 14	AB5	B	371	376	Right-handed alpha
Helix 15	AB6	B	387	399	Right-handed alpha
Helix 16	AB7	B	489	491	Right-handed 310
Helix 17	AB8	B	511	523	Right-handed alpha
Helix 18	AB9	B	530	535	Right-handed alpha
Helix 19	AC1	B	540	544	Right-handed 310
Helix 20	AC2	B	565	570	Right-handed alpha
Helix 21	AC3	B	605	617	Right-handed alpha
Helix 22	AC4	C	13	26	Right-handed alpha
Helix 23	AC5	C	51	58	Right-handed alpha
Helix 24	AC6	C	60	65	Right-handed alpha
Helix 25	AC7	C	108	124	Right-handed alpha
Helix 26	AC8	C	169	175	Right-handed alpha
Helix 27	AC9	C	200	207	Right-handed alpha
Helix 28	AD1	C	222	224	Right-handed 310
Helix 29	AD2	C	247	252	Right-handed alpha
Helix 30	AD3	C	257	266	Right-handed alpha
Helix 31	AD4	C	269	274	Right-handed alpha
Helix 32	AD5	C	309	313	Right-handed 310
Helix 33	AD6	C	322	344	Right-handed alpha
Helix 34	AD7	C	352	361	Right-handed alpha
Helix 35	AD8	C	361	370	Right-handed alpha
Helix 36	AD9	C	373	379	Right-handed alpha
Helix 37	AE1	C	386	400	Right-handed alpha
Helix 38	AE2	C	409	421	Right-handed alpha
Helix 39	AE3	C	422	433	Right-handed alpha
Helix 40	AE4	C	433	438	Right-handed alpha
Helix 41	AE5	D	440	446	Right-handed alpha
Helix 42	AE6	D	474	479	Right-handed alpha
Helix 43	AE7	D	496	499	Right-handed 310
Helix 44	AE8	D	503	509	Right-handed alpha
Helix 45	AE9	E	35	53	Right-handed alpha
Helix 46	AF1	E	63	65	Right-handed 310
Helix 47	AF2	E	66	75	Right-handed alpha
Helix 48	AF3	E	93	109	Right-handed alpha
Helix 49	AF4	E	131	140	Right-handed alpha
Helix 50	AF5	E	195	204	Right-handed alpha
Helix 51	AF6	E	211	216	Right-handed alpha
Helix 52	AF7	E	253	264	Right-handed alpha
Helix 53	AF8	E	266	272	Right-handed 310
Helix 54	AF9	F	305	319	Right-handed alpha
Helix 55	AG1	F	335	346	Right-handed alpha
Helix 56	AG2	F	355	359	Right-handed 310
Helix 57	AG3	F	362	370	Right-handed alpha
Helix 58	AG4	F	371	376	Right-handed alpha
Helix 59	AG5	F	387	399	Right-handed alpha
Helix 60	AG6	F	489	491	Right-handed 310
Helix 61	AG7	F	511	523	Right-handed alpha
Helix 62	AG8	F	530	535	Right-handed alpha
Helix 63	AG9	F	540	544	Right-handed 310
Helix 64	AH1	F	565	570	Right-handed alpha
Helix 65	AH2	F	605	617	Right-handed alpha
Helix 66	AH3	G	13	26	Right-handed alpha
Helix 67	AH4	G	51	58	Right-handed alpha
Helix 68	AH5	G	60	65	Right-handed alpha
Helix 69	AH6	G	108	124	Right-handed alpha
Helix 70	AH7	G	169	175	Right-handed alpha
Helix 71	AH8	G	200	207	Right-handed alpha
Helix 72	AH9	G	222	224	Right-handed 310
Helix 73	AI1	G	247	252	Right-handed alpha
Helix 74	AI2	G	257	266	Right-handed alpha
Helix 75	AI3	G	269	274	Right-handed alpha
Helix 76	AI4	G	309	313	Right-handed 310
Helix 77	AI5	G	322	344	Right-handed alpha
Helix 78	AI6	G	352	361	Right-handed alpha
Helix 79	AI7	G	361	370	Right-handed alpha
Helix 80	AI8	G	373	379	Right-handed alpha
Helix 81	AI9	G	386	400	Right-handed alpha
Helix 82	AJ1	G	409	421	Right-handed alpha
Helix 83	AJ2	G	422	433	Right-handed alpha
Helix 84	AJ3	G	433	438	Right-handed alpha
Helix 85	AJ4	H	440	446	Right-handed alpha
Helix 86	AJ5	H	474	479	Right-handed alpha
Helix 87	AJ6	H	496	499	Right-handed 310
Helix 88	AJ7	H	503	509	Right-handed alpha

There are 32 sheets in PDB entry 7KOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	80	84	parallel
Strand 3	A	55	61	parallel
Strand 4	A	2	6	parallel
Strand 5	A	117	121	parallel
Strand 6	A	180	184	parallel
Strand 7	A	143	151	parallel
Strand 8	A	160	166	anti-parallel
Strand 9	A	170	177	anti-parallel
Strand 10	B	481	482	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	80	84	parallel
Strand 3	A	55	61	parallel
Strand 4	A	2	6	parallel
Strand 5	A	117	121	parallel
Strand 6	A	180	184	parallel
Strand 7	A	143	151	parallel
Strand 8	A	160	166	anti-parallel
Strand 9	A	170	177	anti-parallel
Strand 10	B	486	487	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	32	34	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	24	26	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	422	427	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	291	294	parallel
Strand 3	B	382	385	parallel
Strand 4	B	445	448	parallel
Strand 5	B	405	409	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	302	303	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	350	354	parallel
Strand 3	B	466	470	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	529	first strand
Strand 2	B	499	503	parallel
Strand 3	B	556	560	parallel
Strand 4	B	578	581	parallel
Strand 5	B	595	597	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	155	157	parallel
Strand 3	C	146	149	anti-parallel
Strand 4	C	133	135	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	30	33	parallel
Strand 3	C	7	10	parallel
Strand 4	C	160	163	parallel
Strand 5	C	305	307	parallel
Strand 6	C	301	302	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	104	107	anti-parallel
Strand 3	C	71	78	anti-parallel
Strand 4	C	212	220	parallel
Strand 5	C	230	234	anti-parallel
Strand 6	C	239	246	anti-parallel
Strand 7	C	187	195	anti-parallel
Strand 8	C	281	290	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	104	107	anti-parallel
Strand 3	C	71	78	anti-parallel
Strand 4	C	212	220	parallel
Strand 5	C	80	83	parallel
Strand 6	C	87	91	anti-parallel
Strand 7	G	94	95	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	G	87	91	anti-parallel
Strand 3	G	80	83	anti-parallel
Strand 4	G	212	220	parallel
Strand 5	G	71	78	parallel
Strand 6	G	104	107	anti-parallel
Strand 7	G	49	50	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	G	87	91	anti-parallel
Strand 3	G	80	83	anti-parallel
Strand 4	G	212	220	parallel
Strand 5	G	230	234	anti-parallel
Strand 6	G	239	246	anti-parallel
Strand 7	G	187	195	anti-parallel
Strand 8	G	281	290	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	451	first strand
Strand 2	D	524	525	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	460	first strand
Strand 2	D	515	516	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	488	first strand
Strand 2	D	491	494	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	209	first strand
Strand 2	E	80	84	parallel
Strand 3	E	55	61	parallel
Strand 4	E	2	6	parallel
Strand 5	E	117	121	parallel
Strand 6	E	180	184	parallel
Strand 7	E	143	151	parallel
Strand 8	E	160	166	anti-parallel
Strand 9	E	170	177	anti-parallel
Strand 10	F	481	482	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	209	first strand
Strand 2	E	80	84	parallel
Strand 3	E	55	61	parallel
Strand 4	E	2	6	parallel
Strand 5	E	117	121	parallel
Strand 6	E	180	184	parallel
Strand 7	E	143	151	parallel
Strand 8	E	160	166	anti-parallel
Strand 9	E	170	177	anti-parallel
Strand 10	F	486	487	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	32	34	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	19	first strand
Strand 2	E	24	26	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	F	432	437	anti-parallel
Strand 3	F	422	427	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	326	first strand
Strand 2	F	291	294	parallel
Strand 3	F	382	385	parallel
Strand 4	F	445	448	parallel
Strand 5	F	405	409	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	299	first strand
Strand 2	F	302	303	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	331	first strand
Strand 2	F	350	354	parallel
Strand 3	F	466	470	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	526	529	first strand
Strand 2	F	499	503	parallel
Strand 3	F	556	560	parallel
Strand 4	F	578	581	parallel
Strand 5	F	595	597	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	4	first strand
Strand 2	G	155	157	parallel
Strand 3	G	146	149	anti-parallel
Strand 4	G	133	135	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	30	33	parallel
Strand 3	G	7	10	parallel
Strand 4	G	160	163	parallel
Strand 5	G	305	307	parallel
Strand 6	G	301	302	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	450	451	first strand
Strand 2	H	524	525	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	459	460	first strand
Strand 2	H	515	516	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	485	488	first strand
Strand 2	H	491	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOE