Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KOV entry

There are 4 chains in PDB entry 7KOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 5	GLU 198
A	SER 4	SER 196
C	SER 4	SER 196
D	SER 4	SER 196

There are 16 helices in PDB entry 7KOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	23	Right-handed alpha
Helix 2	AA2	B	27	44	Right-handed alpha
Helix 3	AA3	B	50	54	Right-handed 310
Helix 4	AA4	B	162	166	Right-handed 310
Helix 5	AA5	A	8	23	Right-handed alpha
Helix 6	AA6	A	27	44	Right-handed alpha
Helix 7	AA7	A	50	54	Right-handed 310
Helix 8	AA8	A	162	166	Right-handed 310
Helix 9	AA9	C	8	23	Right-handed alpha
Helix 10	AB1	C	27	44	Right-handed alpha
Helix 11	AB2	C	50	54	Right-handed 310
Helix 12	AB3	C	162	166	Right-handed 310
Helix 13	AB4	D	8	24	Right-handed alpha
Helix 14	AB5	D	27	44	Right-handed alpha
Helix 15	AB6	D	50	54	Right-handed 310
Helix 16	AB7	D	162	166	Right-handed 310

There are 18 sheets in PDB entry 7KOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	153	159	anti-parallel
Strand 4	B	96	102	anti-parallel
Strand 5	B	131	134	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	105	112	anti-parallel
Strand 3	B	124	126	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	105	112	anti-parallel
Strand 3	B	141	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	177	180	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	C	188	190	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	153	159	anti-parallel
Strand 4	A	96	102	anti-parallel
Strand 5	A	131	134	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	105	112	anti-parallel
Strand 3	A	124	126	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	105	112	anti-parallel
Strand 3	A	141	146	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	177	180	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	D	188	190	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	68	first strand
Strand 2	C	75	81	anti-parallel
Strand 3	C	153	159	anti-parallel
Strand 4	C	96	102	anti-parallel
Strand 5	C	131	134	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	105	112	anti-parallel
Strand 3	C	124	126	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	105	112	anti-parallel
Strand 3	C	141	146	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	177	180	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	68	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	153	159	anti-parallel
Strand 4	D	96	102	anti-parallel
Strand 5	D	131	134	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	105	112	anti-parallel
Strand 3	D	124	126	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	105	112	anti-parallel
Strand 3	D	141	146	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	177	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOV