Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KOX entry

There are 5 chains in PDB entry 7KOX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	PHE 478
B	GLU 1	PHE 478
C	GLU 1	PHE 478
D	GLU 1	PHE 478
E	GLU 1	PHE 478

There are 50 helices in PDB entry 7KOX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	11	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	207	214	Right-handed alpha
Helix 4	AA4	A	214	231	Right-handed alpha
Helix 5	AA5	A	237	260	Right-handed alpha
Helix 6	AA6	A	268	294	Right-handed alpha
Helix 7	AA7	A	305	320	Right-handed alpha
Helix 8	AA8	A	414	432	Right-handed alpha
Helix 9	AA9	A	435	465	Right-handed alpha
Helix 10	AB1	A	469	478	Right-handed alpha
Helix 11	AB2	B	2	11	Right-handed alpha
Helix 12	AB3	B	80	84	Right-handed 310
Helix 13	AB4	B	207	214	Right-handed alpha
Helix 14	AB5	B	214	231	Right-handed alpha
Helix 15	AB6	B	237	260	Right-handed alpha
Helix 16	AB7	B	268	294	Right-handed alpha
Helix 17	AB8	B	305	320	Right-handed alpha
Helix 18	AB9	B	414	432	Right-handed alpha
Helix 19	AC1	B	435	465	Right-handed alpha
Helix 20	AC2	B	469	478	Right-handed alpha
Helix 21	AC3	C	2	11	Right-handed alpha
Helix 22	AC4	C	80	84	Right-handed 310
Helix 23	AC5	C	207	214	Right-handed alpha
Helix 24	AC6	C	214	231	Right-handed alpha
Helix 25	AC7	C	237	260	Right-handed alpha
Helix 26	AC8	C	268	294	Right-handed alpha
Helix 27	AC9	C	305	320	Right-handed alpha
Helix 28	AD1	C	414	432	Right-handed alpha
Helix 29	AD2	C	435	465	Right-handed alpha
Helix 30	AD3	C	469	478	Right-handed alpha
Helix 31	AD4	D	2	11	Right-handed alpha
Helix 32	AD5	D	80	84	Right-handed 310
Helix 33	AD6	D	207	214	Right-handed alpha
Helix 34	AD7	D	214	231	Right-handed alpha
Helix 35	AD8	D	237	260	Right-handed alpha
Helix 36	AD9	D	268	294	Right-handed alpha
Helix 37	AE1	D	305	320	Right-handed alpha
Helix 38	AE2	D	414	432	Right-handed alpha
Helix 39	AE3	D	435	465	Right-handed alpha
Helix 40	AE4	D	469	478	Right-handed alpha
Helix 41	AE5	E	2	11	Right-handed alpha
Helix 42	AE6	E	80	84	Right-handed 310
Helix 43	AE7	E	207	214	Right-handed alpha
Helix 44	AE8	E	214	231	Right-handed alpha
Helix 45	AE9	E	237	260	Right-handed alpha
Helix 46	AF1	E	268	294	Right-handed alpha
Helix 47	AF2	E	305	320	Right-handed alpha
Helix 48	AF3	E	414	432	Right-handed alpha
Helix 49	AF4	E	435	465	Right-handed alpha
Helix 50	AF5	E	469	478	Right-handed alpha

There are 20 sheets in PDB entry 7KOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	120	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	28	43	anti-parallel
Strand 6	A	155	159	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	196	205	anti-parallel
Strand 4	A	173	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	196	205	anti-parallel
Strand 4	A	180	183	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	114	117	anti-parallel
Strand 4	B	48	60	anti-parallel
Strand 5	B	120	126	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	114	117	anti-parallel
Strand 4	B	48	60	anti-parallel
Strand 5	B	28	43	anti-parallel
Strand 6	B	155	159	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	196	205	anti-parallel
Strand 4	B	173	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	196	205	anti-parallel
Strand 4	B	180	183	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	120	126	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	28	43	anti-parallel
Strand 6	C	155	159	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	196	205	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	196	205	anti-parallel
Strand 4	C	180	183	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	120	126	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	28	43	anti-parallel
Strand 6	D	155	159	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	196	205	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	196	205	anti-parallel
Strand 4	D	180	183	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	120	126	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	28	43	anti-parallel
Strand 6	E	155	159	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	196	205	anti-parallel
Strand 4	E	173	177	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	196	205	anti-parallel
Strand 4	E	180	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KOX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KOX