Analysis of interatomic Contacts of Structural Units in PDB entry:
7KP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KP4 entry

There are 2 chains in PDB entry 7KP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5PRO 186
B
 MET 191ARG 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7KP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 26Right-handed alpha
Helix 2
2
A
68 69Right-handed alpha
Helix 3
3
A
74 102Right-handed alpha
Helix 4
4
A
111 149Right-handed alpha
Helix 5
5
A
161 184Right-handed alpha
Helix 6
6
B
210 219Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7KP4. Click on sheet of interest to get list of strands forming it: 1, 2, 3,

There are 5 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
30 35anti-parallel
Strand 5
A
156 160anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
237 243parallel
Strand 3
B
295 302anti-parallel
Strand 4
B
259 266anti-parallel
Strand 5
B
271 277anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 228first strand
Strand 2
B
312 318anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
286 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il