Analysis of interatomic Contacts of Structural Units in PDB entry:
7KPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KPE entry

There are 12 chains in PDB entry 7KPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 3VAL 165
A
GLU 167PHE 298
B
LYS 3VAL 165
B
GLU 167PHE 298
C
LYS 3VAL 165
C
GLU 167PHE 298
D
ILE 6VAL 165
D
GLU 167PHE 298
E
ASN 4VAL 165
E
GLU 167PHE 298
F
LYS 3VAL 165
F
GLU 167PHE 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 7KPE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
23 36Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
115 130Right-handed alpha
Helix 6
AA6
A
139 144Right-handed alpha
Helix 7
AA7
A
148 159Right-handed alpha
Helix 8
AA8
A
171 182Right-handed alpha
Helix 9
AA9
A
191 193Right-handed 310
Helix 10
AB1
A
194 201Right-handed alpha
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
214 227Right-handed alpha
Helix 13
AB4
A
229 247Right-handed alpha
Helix 14
AB5
A
253 263Right-handed alpha
Helix 15
AB6
A
279 291Right-handed alpha
Helix 16
AB7
B
23 36Right-handed alpha
Helix 17
AB8
B
50 54Right-handed 310
Helix 18
AB9
B
55 70Right-handed alpha
Helix 19
AC1
B
85 99Right-handed alpha
Helix 20
AC2
B
115 130Right-handed alpha
Helix 21
AC3
B
139 144Right-handed alpha
Helix 22
AC4
B
148 159Right-handed alpha
Helix 23
AC5
B
171 182Right-handed alpha
Helix 24
AC6
B
191 193Right-handed 310
Helix 25
AC7
B
194 201Right-handed alpha
Helix 26
AC8
B
209 213Right-handed 310
Helix 27
AC9
B
214 227Right-handed alpha
Helix 28
AD1
B
229 247Right-handed alpha
Helix 29
AD2
B
253 263Right-handed alpha
Helix 30
AD3
B
279 291Right-handed alpha
Helix 31
AD4
C
23 36Right-handed alpha
Helix 32
AD5
C
50 54Right-handed 310
Helix 33
AD6
C
55 70Right-handed alpha
Helix 34
AD7
C
85 99Right-handed alpha
Helix 35
AD8
C
115 128Right-handed alpha
Helix 36
AD9
C
139 144Right-handed alpha
Helix 37
AE1
C
148 159Right-handed alpha
Helix 38
AE2
C
171 182Right-handed alpha
Helix 39
AE3
C
191 193Right-handed 310
Helix 40
AE4
C
194 201Right-handed alpha
Helix 41
AE5
C
209 213Right-handed 310
Helix 42
AE6
C
214 227Right-handed alpha
Helix 43
AE7
C
229 247Right-handed alpha
Helix 44
AE8
C
253 263Right-handed alpha
Helix 45
AE9
C
279 291Right-handed alpha
Helix 46
AF1
D
23 37Right-handed alpha
Helix 47
AF2
D
50 54Right-handed 310
Helix 48
AF3
D
55 71Right-handed alpha
Helix 49
AF4
D
85 99Right-handed alpha
Helix 50
AF5
D
115 128Right-handed alpha
Helix 51
AF6
D
139 144Right-handed alpha
Helix 52
AF7
D
148 159Right-handed alpha
Helix 53
AF8
D
171 182Right-handed alpha
Helix 54
AF9
D
191 193Right-handed 310
Helix 55
AG1
D
194 201Right-handed alpha
Helix 56
AG2
D
209 213Right-handed 310
Helix 57
AG3
D
214 227Right-handed alpha
Helix 58
AG4
D
229 247Right-handed alpha
Helix 59
AG5
D
253 263Right-handed alpha
Helix 60
AG6
D
279 291Right-handed alpha
Helix 61
AG7
E
23 36Right-handed alpha
Helix 62
AG8
E
50 54Right-handed 310
Helix 63
AG9
E
55 71Right-handed alpha
Helix 64
AH1
E
85 99Right-handed alpha
Helix 65
AH2
E
115 128Right-handed alpha
Helix 66
AH3
E
139 144Right-handed alpha
Helix 67
AH4
E
148 159Right-handed alpha
Helix 68
AH5
E
171 182Right-handed alpha
Helix 69
AH6
E
191 193Right-handed 310
Helix 70
AH7
E
194 201Right-handed alpha
Helix 71
AH8
E
209 213Right-handed 310
Helix 72
AH9
E
214 227Right-handed alpha
Helix 73
AI1
E
229 247Right-handed alpha
Helix 74
AI2
E
253 263Right-handed alpha
Helix 75
AI3
E
279 291Right-handed alpha
Helix 76
AI4
F
23 36Right-handed alpha
Helix 77
AI5
F
50 54Right-handed 310
Helix 78
AI6
F
55 70Right-handed alpha
Helix 79
AI7
F
85 99Right-handed alpha
Helix 80
AI8
F
115 128Right-handed alpha
Helix 81
AI9
F
139 144Right-handed alpha
Helix 82
AJ1
F
148 159Right-handed alpha
Helix 83
AJ2
F
171 182Right-handed alpha
Helix 84
AJ3
F
191 193Right-handed 310
Helix 85
AJ4
F
194 201Right-handed alpha
Helix 86
AJ5
F
209 213Right-handed 310
Helix 87
AJ6
F
214 227Right-handed alpha
Helix 88
AJ7
F
229 247Right-handed alpha
Helix 89
AJ8
F
253 263Right-handed alpha
Helix 90
AJ9
F
279 291Right-handed alpha
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There are 12 sheets in PDB entry 7KPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 12first strand
Strand 2
A
41 43parallel
Strand 3
A
76 80parallel
Strand 4
A
103 107parallel
Strand 5
A
134 138parallel
Strand 6
A
162 167parallel
Strand 7
A
186 189parallel
Strand 8
A
205 208parallel
Strand 9
A
8 12parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 18first strand
Strand 2
A
21 22anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
8 12first strand
Strand 2
B
41 43parallel
Strand 3
B
76 80parallel
Strand 4
B
103 107parallel
Strand 5
B
134 138parallel
Strand 6
B
162 167parallel
Strand 7
B
186 189parallel
Strand 8
B
205 208parallel
Strand 9
B
8 12parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 18first strand
Strand 2
B
21 22anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 12first strand
Strand 2
C
41 43parallel
Strand 3
C
76 80parallel
Strand 4
C
103 107parallel
Strand 5
C
134 138parallel
Strand 6
C
162 167parallel
Strand 7
C
186 189parallel
Strand 8
C
205 208parallel
Strand 9
C
8 12parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 18first strand
Strand 2
C
21 22anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
8 12first strand
Strand 2
D
41 43parallel
Strand 3
D
76 80parallel
Strand 4
D
103 107parallel
Strand 5
D
134 138parallel
Strand 6
D
162 167parallel
Strand 7
D
186 189parallel
Strand 8
D
205 208parallel
Strand 9
D
8 12parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 18first strand
Strand 2
D
21 22anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
8 12first strand
Strand 2
E
41 43parallel
Strand 3
E
76 80parallel
Strand 4
E
103 107parallel
Strand 5
E
134 138parallel
Strand 6
E
162 167parallel
Strand 7
E
186 189parallel
Strand 8
E
205 208parallel
Strand 9
E
8 12parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 18first strand
Strand 2
E
21 22anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
8 12first strand
Strand 2
F
41 43parallel
Strand 3
F
76 80parallel
Strand 4
F
103 107parallel
Strand 5
F
134 138parallel
Strand 6
F
162 167parallel
Strand 7
F
186 189parallel
Strand 8
F
205 208parallel
Strand 9
F
8 12parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
17 18first strand
Strand 2
F
21 22anti-parallel
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