Analysis of interatomic Contacts of Structural Units in PDB entry:
7KPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KPT entry

There is 1 chain in PDB entry 7KPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20GLU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7KPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 42Right-handed alpha
Helix 2
AA2
A
65 73Right-handed alpha
Helix 3
AA3
A
74 77Right-handed 310
Helix 4
AA4
A
78 87Right-handed alpha
Helix 5
AA5
A
122 136Right-handed alpha
Helix 6
AA6
A
178 186Right-handed alpha
Helix 7
AA7
A
206 208Right-handed 310
Helix 8
AA8
A
211 213Right-handed 310
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
269 277Right-handed alpha
Helix 11
AB2
A
282 292Right-handed alpha
Helix 12
AB3
A
323 326Right-handed 310
Helix 13
AB4
A
330 334Right-handed 310
Helix 14
AB5
A
335 355Right-handed alpha
Helix 15
AB6
A
358 391Right-handed alpha
Helix 16
AB7
A
408 413Right-handed alpha
Helix 17
AB8
A
415 433Right-handed alpha
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There are 4 sheets in PDB entry 7KPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
45 49parallel
Strand 3
A
22 26parallel
Strand 4
A
169 172parallel
Strand 5
A
319 321parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
118 121anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
227 232parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
247 255anti-parallel
Strand 6
A
192 204anti-parallel
Strand 7
A
298 305anti-parallel
Strand 8
A
266 267anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
163 167anti-parallel
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