Analysis of interatomic Contacts of Structural Units in PDB entry:
7KQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KQ6 entry

There are 3 chains in PDB entry 7KQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 10	ASP 619
B	PRO 11	VAL 616
C	PRO 11	PHE 89

There are 69 helices in PDB entry 7KQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	25	31	Right-handed alpha
Helix 3	AA3	A	40	54	Right-handed alpha
Helix 4	AA4	A	54	67	Right-handed alpha
Helix 5	AA5	A	95	101	Right-handed alpha
Helix 6	AA6	A	101	108	Right-handed alpha
Helix 7	AA7	A	129	146	Right-handed alpha
Helix 8	AA8	A	161	175	Right-handed alpha
Helix 9	AA9	A	186	198	Right-handed alpha
Helix 10	AB1	A	216	226	Right-handed alpha
Helix 11	AB2	A	254	259	Right-handed alpha
Helix 12	AB3	A	295	309	Right-handed alpha
Helix 13	AB4	A	326	333	Right-handed alpha
Helix 14	AB5	A	334	340	Right-handed alpha
Helix 15	AB6	A	357	367	Right-handed alpha
Helix 16	AB7	A	374	385	Right-handed alpha
Helix 17	AB8	A	386	389	Right-handed 310
Helix 18	AB9	A	407	417	Right-handed alpha
Helix 19	AC1	A	431	435	Right-handed 310
Helix 20	AC2	A	498	507	Right-handed alpha
Helix 21	AC3	A	547	556	Right-handed alpha
Helix 22	AC4	A	589	605	Right-handed alpha
Helix 23	AC5	A	606	610	Right-handed 310
Helix 24	AC6	B	13	17	Right-handed 310
Helix 25	AC7	B	25	31	Right-handed alpha
Helix 26	AC8	B	40	54	Right-handed alpha
Helix 27	AC9	B	54	67	Right-handed alpha
Helix 28	AD1	B	95	101	Right-handed alpha
Helix 29	AD2	B	101	108	Right-handed alpha
Helix 30	AD3	B	129	146	Right-handed alpha
Helix 31	AD4	B	161	175	Right-handed alpha
Helix 32	AD5	B	186	198	Right-handed alpha
Helix 33	AD6	B	216	226	Right-handed alpha
Helix 34	AD7	B	254	259	Right-handed alpha
Helix 35	AD8	B	295	309	Right-handed alpha
Helix 36	AD9	B	326	333	Right-handed alpha
Helix 37	AE1	B	334	340	Right-handed alpha
Helix 38	AE2	B	357	367	Right-handed alpha
Helix 39	AE3	B	374	385	Right-handed alpha
Helix 40	AE4	B	386	389	Right-handed 310
Helix 41	AE5	B	407	417	Right-handed alpha
Helix 42	AE6	B	431	435	Right-handed 310
Helix 43	AE7	B	498	507	Right-handed alpha
Helix 44	AE8	B	547	556	Right-handed alpha
Helix 45	AE9	B	590	605	Right-handed alpha
Helix 46	AF1	B	606	610	Right-handed 310
Helix 47	AF2	C	13	17	Right-handed 310
Helix 48	AF3	C	25	31	Right-handed alpha
Helix 49	AF4	C	40	54	Right-handed alpha
Helix 50	AF5	C	54	67	Right-handed alpha
Helix 51	AF6	C	95	101	Right-handed alpha
Helix 52	AF7	C	101	108	Right-handed alpha
Helix 53	AF8	C	129	146	Right-handed alpha
Helix 54	AF9	C	161	175	Right-handed alpha
Helix 55	AG1	C	186	198	Right-handed alpha
Helix 56	AG2	C	216	226	Right-handed alpha
Helix 57	AG3	C	254	259	Right-handed alpha
Helix 58	AG4	C	295	309	Right-handed alpha
Helix 59	AG5	C	326	333	Right-handed alpha
Helix 60	AG6	C	334	341	Right-handed alpha
Helix 61	AG7	C	357	367	Right-handed alpha
Helix 62	AG8	C	374	385	Right-handed alpha
Helix 63	AG9	C	386	389	Right-handed 310
Helix 64	AH1	C	407	417	Right-handed alpha
Helix 65	AH2	C	431	435	Right-handed 310
Helix 66	AH3	C	498	507	Right-handed alpha
Helix 67	AH4	C	547	556	Right-handed alpha
Helix 68	AH5	C	589	605	Right-handed alpha
Helix 69	AH6	C	606	610	Right-handed 310

There are 24 sheets in PDB entry 7KQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	87	90	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	270	271	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	112	117	anti-parallel
Strand 3	A	343	347	parallel
Strand 4	A	317	320	parallel
Strand 5	A	370	373	parallel
Strand 6	A	398	402	parallel
Strand 7	A	424	428	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	233	237	parallel
Strand 3	A	201	205	parallel
Strand 4	A	153	157	parallel
Strand 5	A	177	180	parallel
Strand 6	A	275	281	parallel
Strand 7	A	289	294	anti-parallel
Strand 8	A	494	495	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	213	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	478	484	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	528	533	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	543	546	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	570	first strand
Strand 2	A	574	583	anti-parallel
Strand 3	A	614	617	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	87	90	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	270	271	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	343	347	parallel
Strand 4	B	317	320	parallel
Strand 5	B	370	373	parallel
Strand 6	B	398	402	parallel
Strand 7	B	424	428	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	233	237	parallel
Strand 3	B	201	205	parallel
Strand 4	B	153	157	parallel
Strand 5	B	177	180	parallel
Strand 6	B	275	281	parallel
Strand 7	B	289	294	anti-parallel
Strand 8	B	494	495	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	213	215	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	465	first strand
Strand 2	B	478	484	anti-parallel
Strand 3	B	514	522	anti-parallel
Strand 4	B	528	533	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	540	first strand
Strand 2	B	543	546	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	566	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	614	615	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	87	90	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	270	271	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	112	117	anti-parallel
Strand 3	C	343	347	parallel
Strand 4	C	317	320	parallel
Strand 5	C	370	373	parallel
Strand 6	C	398	402	parallel
Strand 7	C	424	428	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	233	237	parallel
Strand 3	C	201	205	parallel
Strand 4	C	153	157	parallel
Strand 5	C	177	180	parallel
Strand 6	C	275	281	parallel
Strand 7	C	289	294	anti-parallel
Strand 8	C	494	495	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	213	215	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	465	first strand
Strand 2	C	478	484	anti-parallel
Strand 3	C	514	522	anti-parallel
Strand 4	C	528	533	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	540	first strand
Strand 2	C	543	546	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	570	first strand
Strand 2	C	574	583	anti-parallel
Strand 3	C	614	615	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KQ6