Analysis of interatomic Contacts of Structural Units in PDB entry:
7KQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KQM entry

There are 3 chains in PDB entry 7KQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 596
B
 U 2 A 18
C
 T 1 G 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7KQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
63 79Right-handed alpha
Helix 6
AA6
A
89 92Right-handed 310
Helix 7
AA7
A
96 104Right-handed 310
Helix 8
AA8
A
110 126Right-handed alpha
Helix 9
AA9
A
126 134Right-handed alpha
Helix 10
AB1
A
151 168Right-handed alpha
Helix 11
AB2
A
205 224Right-handed alpha
Helix 12
AB3
A
229 240Right-handed alpha
Helix 13
AB4
A
260 271Right-handed alpha
Helix 14
AB5
A
277 290Right-handed alpha
Helix 15
AB6
A
312 330Right-handed alpha
Helix 16
AB7
A
351 366Right-handed alpha
Helix 17
AB8
A
369 373Right-handed 310
Helix 18
AB9
A
412 417Right-handed 310
Helix 19
AC1
A
430 439Right-handed alpha
Helix 20
AC2
A
440 448Right-handed 310
Helix 21
AC3
A
449 454Right-handed alpha
Helix 22
AC4
A
459 485Right-handed alpha
Helix 23
AC5
A
488 493Right-handed alpha
Helix 24
AC6
A
493 519Right-handed alpha
Helix 25
AC7
A
528 545Right-handed alpha
Helix 26
AC8
A
547 562Right-handed alpha
Helix 27
AC9
A
574 580Right-handed 310
Helix 28
AD1
A
582 587Right-handed alpha
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There are 5 sheets in PDB entry 7KQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
85 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
146 150anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
299 302anti-parallel
Strand 3
A
292 294anti-parallel
Strand 4
A
182 189parallel
Strand 5
A
192 199anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
374 375anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
401 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il