Analysis of interatomic Contacts of Structural Units in PDB entry:
7KQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KQZ entry

There is 1 chain in PDB entry 7KQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11LEU 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7KQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
54 67Right-handed alpha
Helix 5
AA5
A
95 101Right-handed alpha
Helix 6
AA6
A
101 108Right-handed alpha
Helix 7
AA7
A
129 146Right-handed alpha
Helix 8
AA8
A
161 175Right-handed alpha
Helix 9
AA9
A
186 198Right-handed alpha
Helix 10
AB1
A
216 226Right-handed alpha
Helix 11
AB2
A
254 259Right-handed alpha
Helix 12
AB3
A
295 309Right-handed alpha
Helix 13
AB4
A
326 333Right-handed alpha
Helix 14
AB5
A
334 341Right-handed alpha
Helix 15
AB6
A
357 367Right-handed alpha
Helix 16
AB7
A
374 385Right-handed alpha
Helix 17
AB8
A
386 389Right-handed 310
Helix 18
AB9
A
407 417Right-handed alpha
Helix 19
AC1
A
431 435Right-handed 310
Helix 20
AC2
A
498 507Right-handed alpha
Helix 21
AC3
A
547 556Right-handed alpha
Helix 22
AC4
A
589 605Right-handed alpha
Helix 23
AC5
A
606 610Right-handed 310
Helix 24
AC6
A
629 637Right-handed alpha
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There are 8 sheets in PDB entry 7KQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
87 90anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
270 271anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
343 347parallel
Strand 4
A
317 320parallel
Strand 5
A
370 373parallel
Strand 6
A
398 401parallel
Strand 7
A
424 427parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
233 237parallel
Strand 3
A
201 205parallel
Strand 4
A
153 157parallel
Strand 5
A
177 180parallel
Strand 6
A
275 281parallel
Strand 7
A
289 294anti-parallel
Strand 8
A
494 495anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
213 215anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
478 484anti-parallel
Strand 3
A
514 522anti-parallel
Strand 4
A
528 533anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 540first strand
Strand 2
A
543 546anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 569first strand
Strand 2
A
575 583anti-parallel
Strand 3
A
614 616parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il