Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KRA entry

There are 12 chains in PDB entry 7KRA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 25	ILE 759
B	LYS 3	ILE 292
C	LEU 2	MET 253
D	GLU 8	ASP 190
E	SER 2	SER 134
F	ASN 12	LEU 106
G	ALA 20	ASN 170
H	ALA 18	ALA 142
I	ALA 2	VAL 223
J	ASP 17	CYS 234
M	UNK 1	UNK 21
N	UNK 1	UNK 24

There are 48 helices in PDB entry 7KRA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	88	90	Right-handed 310
Helix 3	AA3	A	248	266	Right-handed alpha
Helix 4	AA4	A	275	282	Right-handed alpha
Helix 5	AA5	A	288	296	Right-handed alpha
Helix 6	AA6	A	726	757	Right-handed alpha
Helix 7	AA7	B	4	17	Right-handed alpha
Helix 8	AA8	B	18	22	Right-handed 310
Helix 9	AA9	B	23	41	Right-handed alpha
Helix 10	AB1	B	46	64	Right-handed alpha
Helix 11	AB2	B	67	78	Right-handed alpha
Helix 12	AB3	B	85	101	Right-handed alpha
Helix 13	AB4	B	104	116	Right-handed alpha
Helix 14	AB5	B	122	141	Right-handed alpha
Helix 15	AB6	B	145	157	Right-handed alpha
Helix 16	AB7	B	162	176	Right-handed alpha
Helix 17	AB8	B	180	193	Right-handed alpha
Helix 18	AB9	B	198	212	Right-handed alpha
Helix 19	AC1	B	215	237	Right-handed alpha
Helix 20	AC2	B	240	255	Right-handed alpha
Helix 21	AC3	B	256	274	Right-handed alpha
Helix 22	AC4	B	281	292	Right-handed alpha
Helix 23	AC5	C	8	34	Right-handed alpha
Helix 24	AC6	C	43	62	Right-handed alpha
Helix 25	AC7	C	70	83	Right-handed alpha
Helix 26	AC8	C	123	140	Right-handed alpha
Helix 27	AC9	C	153	161	Right-handed alpha
Helix 28	AD1	C	176	187	Right-handed alpha
Helix 29	AD2	C	187	195	Right-handed alpha
Helix 30	AD3	C	221	232	Right-handed alpha
Helix 31	AD4	C	243	251	Right-handed alpha
Helix 32	AD5	D	9	17	Right-handed alpha
Helix 33	AD6	D	142	159	Right-handed alpha
Helix 34	AD7	D	172	176	Right-handed 310
Helix 35	AD8	E	3	29	Right-handed alpha
Helix 36	AD9	E	31	37	Right-handed alpha
Helix 37	AE1	E	46	66	Right-handed alpha
Helix 38	AE2	E	94	105	Right-handed alpha
Helix 39	AE3	E	111	116	Right-handed alpha
Helix 40	AE4	E	116	128	Right-handed alpha
Helix 41	AE5	F	16	31	Right-handed alpha
Helix 42	AE6	F	36	42	Right-handed alpha
Helix 43	AE7	F	45	68	Right-handed alpha
Helix 44	AE8	F	79	85	Right-handed alpha
Helix 45	AE9	F	92	105	Right-handed alpha
Helix 46	AF1	J	202	208	Right-handed alpha
Helix 47	AF2	M	2	21	Right-handed alpha
Helix 48	AF3	N	2	24	Right-handed alpha

There are 28 sheets in PDB entry 7KRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	79	85	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	103	105	anti-parallel
Strand 3	A	112	115	anti-parallel
Strand 4	A	122	126	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	167	168	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	186	190	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	207	213	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	226	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	310	315	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	354	359	anti-parallel
Strand 4	A	366	372	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	384	first strand
Strand 2	A	391	396	anti-parallel
Strand 3	A	400	405	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	439	442	anti-parallel
Strand 3	A	445	448	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	452	453	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	465	first strand
Strand 2	A	492	499	anti-parallel
Strand 3	A	504	511	anti-parallel
Strand 4	A	520	523	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	541	548	anti-parallel
Strand 3	A	554	563	anti-parallel
Strand 4	A	592	600	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	608	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	630	633	anti-parallel
Strand 4	A	672	673	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	691	first strand
Strand 2	A	698	703	anti-parallel
Strand 3	A	708	712	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	173	174	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	28	first strand
Strand 2	G	72	74	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	64	first strand
Strand 2	G	44	52	anti-parallel
Strand 3	G	95	96	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	64	first strand
Strand 2	G	44	52	anti-parallel
Strand 3	G	87	92	anti-parallel
Strand 4	G	106	112	anti-parallel
Strand 5	G	118	124	anti-parallel
Strand 6	G	144	146	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	55	first strand
Strand 2	H	32	42	anti-parallel
Strand 3	H	19	26	anti-parallel
Strand 4	H	61	70	anti-parallel
Strand 5	H	74	76	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	55	first strand
Strand 2	H	32	42	anti-parallel
Strand 3	H	19	26	anti-parallel
Strand 4	H	61	70	anti-parallel
Strand 5	H	81	85	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	109	first strand
Strand 2	H	90	96	anti-parallel
Strand 3	H	117	121	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	9	first strand
Strand 2	I	21	25	anti-parallel
Strand 3	I	83	85	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	119	123	parallel
Strand 3	I	93	96	anti-parallel
Strand 4	I	39	41	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	134	first strand
Strand 2	I	153	157	anti-parallel
Strand 3	I	188	191	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	208	212	first strand
Strand 2	I	217	221	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	22	first strand
Strand 2	J	35	41	anti-parallel
Strand 3	J	91	96	anti-parallel
Strand 4	J	83	88	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	69	first strand
Strand 2	J	54	59	anti-parallel
Strand 3	J	105	111	anti-parallel
Strand 4	J	120	124	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	138	first strand
Strand 2	J	150	159	anti-parallel
Strand 3	J	193	201	anti-parallel
Strand 4	J	179	184	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	173	174	first strand
Strand 2	J	164	170	anti-parallel
Strand 3	J	212	218	anti-parallel
Strand 4	J	225	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KRA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRA