Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KRJ entry

There are 4 chains in PDB entry 7KRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	ILE 698
B	GLU 15	ILE 698
C	MET 1	ASP 133
D	ALA 523	LYS 777

There are 67 helices in PDB entry 7KRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	42	63	Right-handed alpha
Helix 3	AA3	A	64	65	Right-handed 310
Helix 4	AA4	A	66	71	Right-handed 310
Helix 5	AA5	A	99	108	Right-handed alpha
Helix 6	AA6	A	113	121	Right-handed alpha
Helix 7	AA7	A	136	144	Right-handed 310
Helix 8	AA8	A	194	198	Right-handed 310
Helix 9	AA9	A	199	212	Right-handed alpha
Helix 10	AB1	A	300	304	Right-handed 310
Helix 11	AB2	A	305	318	Right-handed alpha
Helix 12	AB3	A	379	383	Right-handed 310
Helix 13	AB4	A	407	431	Right-handed alpha
Helix 14	AB5	A	432	452	Right-handed alpha
Helix 15	AB6	A	455	461	Right-handed alpha
Helix 16	AB7	A	476	483	Right-handed alpha
Helix 17	AB8	A	498	504	Right-handed alpha
Helix 18	AB9	A	505	507	Right-handed 310
Helix 19	AC1	A	508	514	Right-handed alpha
Helix 20	AC2	A	525	530	Right-handed alpha
Helix 21	AC3	A	554	568	Right-handed alpha
Helix 22	AC4	A	568	579	Right-handed alpha
Helix 23	AC5	A	607	615	Right-handed alpha
Helix 24	AC6	A	621	625	Right-handed 310
Helix 25	AC7	A	640	653	Right-handed alpha
Helix 26	AC8	A	656	674	Right-handed alpha
Helix 27	AC9	A	680	696	Right-handed alpha
Helix 28	AD1	B	25	37	Right-handed alpha
Helix 29	AD2	B	40	42	Right-handed 310
Helix 30	AD3	B	43	63	Right-handed alpha
Helix 31	AD4	B	64	65	Right-handed 310
Helix 32	AD5	B	66	71	Right-handed 310
Helix 33	AD6	B	99	108	Right-handed alpha
Helix 34	AD7	B	113	122	Right-handed alpha
Helix 35	AD8	B	137	143	Right-handed 310
Helix 36	AD9	B	195	198	Right-handed 310
Helix 37	AE1	B	199	212	Right-handed alpha
Helix 38	AE2	B	300	304	Right-handed 310
Helix 39	AE3	B	305	318	Right-handed alpha
Helix 40	AE4	B	379	383	Right-handed 310
Helix 41	AE5	B	406	428	Right-handed alpha
Helix 42	AE6	B	430	452	Right-handed alpha
Helix 43	AE7	B	455	460	Right-handed alpha
Helix 44	AE8	B	461	463	Right-handed 310
Helix 45	AE9	B	476	483	Right-handed alpha
Helix 46	AF1	B	498	504	Right-handed alpha
Helix 47	AF2	B	505	507	Right-handed 310
Helix 48	AF3	B	508	514	Right-handed alpha
Helix 49	AF4	B	525	531	Right-handed alpha
Helix 50	AF5	B	554	568	Right-handed alpha
Helix 51	AF6	B	568	580	Right-handed alpha
Helix 52	AF7	B	607	615	Right-handed alpha
Helix 53	AF8	B	621	625	Right-handed 310
Helix 54	AF9	B	640	653	Right-handed alpha
Helix 55	AG1	B	656	674	Right-handed alpha
Helix 56	AG2	B	680	696	Right-handed alpha
Helix 57	AG3	C	103	106	Right-handed 310
Helix 58	AG4	C	119	131	Right-handed alpha
Helix 59	AG5	D	531	540	Right-handed alpha
Helix 60	AG6	D	555	581	Right-handed alpha
Helix 61	AG7	D	583	587	Right-handed 310
Helix 62	AG8	D	588	614	Right-handed alpha
Helix 63	AG9	D	642	656	Right-handed alpha
Helix 64	AH1	D	659	672	Right-handed alpha
Helix 65	AH2	D	682	703	Right-handed alpha
Helix 66	AH3	D	707	742	Right-handed alpha
Helix 67	AH4	D	750	765	Right-handed alpha

There are 13 sheets in PDB entry 7KRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	160	164	anti-parallel
Strand 4	B	145	153	anti-parallel
Strand 5	B	183	190	anti-parallel
Strand 6	B	88	93	anti-parallel
Strand 7	B	78	83	anti-parallel
Strand 8	B	218	224	parallel
Strand 9	B	284	289	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	78	83	parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	183	189	anti-parallel
Strand 6	A	148	153	anti-parallel
Strand 7	A	160	164	anti-parallel
Strand 8	A	169	174	anti-parallel
Strand 9	B	18	21	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	B	23	24	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	331	first strand
Strand 2	A	337	343	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	361	365	parallel
Strand 5	A	368	371	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	518	521	anti-parallel
Strand 3	A	490	495	parallel
Strand 4	A	539	543	parallel
Strand 5	A	535	536	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	632	636	parallel
Strand 3	A	598	601	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	331	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	360	365	parallel
Strand 5	B	368	371	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	518	521	anti-parallel
Strand 3	B	490	495	parallel
Strand 4	B	539	543	parallel
Strand 5	B	535	536	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	632	636	parallel
Strand 3	B	597	601	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	68	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	6	10	anti-parallel
Strand 5	C	99	101	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	32	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	47	54	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	621	622	first strand
Strand 2	D	628	629	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	674	676	first strand
Strand 2	D	769	771	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRJ