Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KRM entry

There are 4 chains in PDB entry 7KRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 249
B
 MET 1HIS 249
C
 MET 1HIS 249
D
 MET 1HIS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7KRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
101 130Right-handed alpha
Helix 6
AA6
A
140 146Right-handed alpha
Helix 7
AA7
A
152 174Right-handed alpha
Helix 8
AA8
A
200 208Right-handed alpha
Helix 9
AA9
A
216 229Right-handed alpha
Helix 10
AB1
A
230 233Right-handed 310
Helix 11
AB2
B
18 30Right-handed alpha
Helix 12
AB3
B
40 52Right-handed alpha
Helix 13
AB4
B
64 80Right-handed alpha
Helix 14
AB5
B
96 100Right-handed 310
Helix 15
AB6
B
101 130Right-handed alpha
Helix 16
AB7
B
140 146Right-handed alpha
Helix 17
AB8
B
152 174Right-handed alpha
Helix 18
AB9
B
205 209Right-handed 310
Helix 19
AC1
B
216 229Right-handed alpha
Helix 20
AC2
B
230 233Right-handed 310
Helix 21
AC3
C
18 30Right-handed alpha
Helix 22
AC4
C
40 52Right-handed alpha
Helix 23
AC5
C
64 80Right-handed alpha
Helix 24
AC6
C
96 100Right-handed 310
Helix 25
AC7
C
101 130Right-handed alpha
Helix 26
AC8
C
141 146Right-handed alpha
Helix 27
AC9
C
152 174Right-handed alpha
Helix 28
AD1
C
200 208Right-handed alpha
Helix 29
AD2
C
217 229Right-handed alpha
Helix 30
AD3
C
230 233Right-handed 310
Helix 31
AD4
D
18 30Right-handed alpha
Helix 32
AD5
D
40 52Right-handed alpha
Helix 33
AD6
D
64 80Right-handed alpha
Helix 34
AD7
D
96 100Right-handed 310
Helix 35
AD8
D
101 130Right-handed alpha
Helix 36
AD9
D
140 146Right-handed alpha
Helix 37
AE1
D
152 174Right-handed alpha
Helix 38
AE2
D
204 208Right-handed alpha
Helix 39
AE3
D
217 229Right-handed alpha
Helix 40
AE4
D
230 233Right-handed 310
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There are 6 sheets in PDB entry 7KRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
33 38parallel
Strand 3
A
7 11parallel
Strand 4
A
84 87parallel
Strand 5
A
133 138parallel
Strand 6
A
178 185parallel
Strand 7
A
239 242parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
33 38parallel
Strand 3
B
7 11parallel
Strand 4
B
84 87parallel
Strand 5
B
133 138parallel
Strand 6
B
178 185parallel
Strand 7
B
239 242parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
33 38parallel
Strand 3
C
7 11parallel
Strand 4
C
84 87parallel
Strand 5
C
133 138parallel
Strand 6
C
178 185parallel
Strand 7
C
239 242parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
215 216parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 59first strand
Strand 2
D
33 38parallel
Strand 3
D
7 11parallel
Strand 4
D
84 87parallel
Strand 5
D
133 138parallel
Strand 6
D
178 185parallel
Strand 7
D
239 242parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 189first strand
Strand 2
D
215 216parallel
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