Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KRW entry

There are 4 chains in PDB entry 7KRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 2	GLY 622
B	GLY 2	GLY 622
A	GLY 2	GLY 622
D	GLY 2	GLY 622

There are 80 helices in PDB entry 7KRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	51	57	Right-handed alpha
Helix 2	AA2	C	58	61	Right-handed 310
Helix 3	AA3	C	69	72	Right-handed 310
Helix 4	AA4	C	79	89	Right-handed alpha
Helix 5	AA5	C	111	132	Right-handed alpha
Helix 6	AA6	C	147	161	Right-handed alpha
Helix 7	AA7	C	171	180	Right-handed alpha
Helix 8	AA8	C	228	249	Right-handed alpha
Helix 9	AA9	C	251	254	Right-handed 310
Helix 10	AB1	C	255	273	Right-handed alpha
Helix 11	AB2	C	302	316	Right-handed alpha
Helix 12	AB3	C	316	328	Right-handed alpha
Helix 13	AB4	C	330	334	Right-handed 310
Helix 14	AB5	C	341	345	Right-handed 310
Helix 15	AB6	C	346	358	Right-handed alpha
Helix 16	AB7	C	369	383	Right-handed alpha
Helix 17	AB8	C	447	451	Right-handed 310
Helix 18	AB9	C	508	522	Right-handed alpha
Helix 19	AC1	C	522	536	Right-handed alpha
Helix 20	AC2	B	51	57	Right-handed alpha
Helix 21	AC3	B	68	72	Right-handed 310
Helix 22	AC4	B	79	89	Right-handed alpha
Helix 23	AC5	B	111	132	Right-handed alpha
Helix 24	AC6	B	147	161	Right-handed alpha
Helix 25	AC7	B	171	180	Right-handed alpha
Helix 26	AC8	B	228	231	Right-handed 310
Helix 27	AC9	B	232	249	Right-handed alpha
Helix 28	AD1	B	251	254	Right-handed 310
Helix 29	AD2	B	255	273	Right-handed alpha
Helix 30	AD3	B	302	309	Right-handed alpha
Helix 31	AD4	B	309	316	Right-handed alpha
Helix 32	AD5	B	316	328	Right-handed alpha
Helix 33	AD6	B	330	334	Right-handed 310
Helix 34	AD7	B	341	345	Right-handed 310
Helix 35	AD8	B	346	358	Right-handed alpha
Helix 36	AD9	B	369	383	Right-handed alpha
Helix 37	AE1	B	447	451	Right-handed 310
Helix 38	AE2	B	508	522	Right-handed alpha
Helix 39	AE3	B	522	536	Right-handed alpha
Helix 40	AE4	A	51	57	Right-handed alpha
Helix 41	AE5	A	69	72	Right-handed 310
Helix 42	AE6	A	79	89	Right-handed alpha
Helix 43	AE7	A	111	132	Right-handed alpha
Helix 44	AE8	A	147	161	Right-handed alpha
Helix 45	AE9	A	171	180	Right-handed alpha
Helix 46	AF1	A	228	249	Right-handed alpha
Helix 47	AF2	A	251	254	Right-handed 310
Helix 48	AF3	A	255	276	Right-handed alpha
Helix 49	AF4	A	302	309	Right-handed alpha
Helix 50	AF5	A	309	316	Right-handed alpha
Helix 51	AF6	A	316	328	Right-handed alpha
Helix 52	AF7	A	330	334	Right-handed 310
Helix 53	AF8	A	341	345	Right-handed 310
Helix 54	AF9	A	346	358	Right-handed alpha
Helix 55	AG1	A	369	384	Right-handed alpha
Helix 56	AG2	A	447	451	Right-handed 310
Helix 57	AG3	A	508	522	Right-handed alpha
Helix 58	AG4	A	522	554	Right-handed alpha
Helix 59	AG5	A	555	557	Right-handed 310
Helix 60	AG6	A	558	577	Right-handed alpha
Helix 61	AG7	A	580	594	Right-handed alpha
Helix 62	AG8	A	595	603	Right-handed alpha
Helix 63	AG9	D	51	57	Right-handed alpha
Helix 64	AH1	D	68	72	Right-handed 310
Helix 65	AH2	D	79	89	Right-handed alpha
Helix 66	AH3	D	111	132	Right-handed alpha
Helix 67	AH4	D	147	161	Right-handed alpha
Helix 68	AH5	D	171	180	Right-handed alpha
Helix 69	AH6	D	225	227	Right-handed 310
Helix 70	AH7	D	228	249	Right-handed alpha
Helix 71	AH8	D	255	273	Right-handed alpha
Helix 72	AH9	D	302	315	Right-handed alpha
Helix 73	AI1	D	316	328	Right-handed alpha
Helix 74	AI2	D	330	334	Right-handed 310
Helix 75	AI3	D	341	345	Right-handed 310
Helix 76	AI4	D	346	358	Right-handed alpha
Helix 77	AI5	D	369	384	Right-handed alpha
Helix 78	AI6	D	447	451	Right-handed 310
Helix 79	AI7	D	508	522	Right-handed alpha
Helix 80	AI8	D	522	536	Right-handed alpha

There are 31 sheets in PDB entry 7KRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	36	37	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	5	8	anti-parallel
Strand 4	C	137	142	parallel
Strand 5	C	164	170	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	65	67	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	101	105	anti-parallel
Strand 3	C	108	110	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	188	195	parallel
Strand 3	C	200	210	anti-parallel
Strand 4	C	213	224	anti-parallel
Strand 5	C	389	391	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	289	first strand
Strand 2	C	292	299	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	412	first strand
Strand 2	C	399	403	anti-parallel
Strand 3	C	436	442	anti-parallel
Strand 4	C	456	459	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	472	478	anti-parallel
Strand 3	C	484	490	anti-parallel
Strand 4	C	496	501	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	35	37	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	4	8	anti-parallel
Strand 4	B	137	142	parallel
Strand 5	B	164	170	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	40	42	anti-parallel
Strand 3	B	65	66	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	108	110	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	188	195	parallel
Strand 3	B	200	210	anti-parallel
Strand 4	B	213	224	anti-parallel
Strand 5	B	389	392	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	289	first strand
Strand 2	B	292	301	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	412	first strand
Strand 2	B	399	403	anti-parallel
Strand 3	B	435	442	anti-parallel
Strand 4	B	452	460	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	484	490	anti-parallel
Strand 3	B	472	478	anti-parallel
Strand 4	B	420	428	anti-parallel
Strand 5	B	619	620	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	36	37	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	5	8	anti-parallel
Strand 4	A	137	142	parallel
Strand 5	A	164	170	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	65	67	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	101	105	anti-parallel
Strand 3	A	108	110	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	188	195	parallel
Strand 3	A	200	210	anti-parallel
Strand 4	A	213	224	anti-parallel
Strand 5	A	390	391	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	289	first strand
Strand 2	A	292	301	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	412	first strand
Strand 2	A	399	403	anti-parallel
Strand 3	A	435	442	anti-parallel
Strand 4	A	452	460	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	501	first strand
Strand 2	A	484	490	anti-parallel
Strand 3	A	471	478	anti-parallel
Strand 4	A	420	428	anti-parallel
Strand 5	A	619	620	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	137	142	parallel
Strand 5	D	164	170	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	65	66	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	108	110	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	188	195	parallel
Strand 3	D	200	210	anti-parallel
Strand 4	D	213	224	anti-parallel
Strand 5	D	389	391	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	289	first strand
Strand 2	D	292	301	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	412	first strand
Strand 2	D	399	403	anti-parallel
Strand 3	D	435	442	anti-parallel
Strand 4	D	452	460	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	501	first strand
Strand 2	D	484	490	anti-parallel
Strand 3	D	472	478	anti-parallel
Strand 4	D	420	428	anti-parallel
Strand 5	D	619	620	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KRW