Analysis of interatomic Contacts of Structural Units in PDB entry:
7KS0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KS0 entry

There are 4 chains in PDB entry 7KS0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 21	LYS 829
B	THR 33	LYS 845
C	LEU 21	LYS 829
D	THR 33	LYS 845

There are104 helices in PDB entry 7KS0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	54	Right-handed alpha
Helix 2	2	A	74	89	Right-handed alpha
Helix 3	3	A	99	114	Right-handed alpha
Helix 4	4	A	141	156	Right-handed alpha
Helix 5	5	A	168	173	Right-handed alpha
Helix 6	6	A	175	179	Right-handed alpha
Helix 7	7	A	199	209	Right-handed alpha
Helix 8	8	A	219	233	Right-handed alpha
Helix 9	9	A	276	290	Right-handed alpha
Helix 10	10	A	301	323	Right-handed alpha
Helix 11	11	A	342	352	Right-handed alpha
Helix 12	12	A	439	441	Right-handed alpha
Helix 13	13	A	446	458	Right-handed alpha
Helix 14	14	A	483	490	Right-handed alpha
Helix 15	15	A	504	507	Right-handed alpha
Helix 16	16	A	537	539	Right-handed alpha
Helix 17	17	A	544	565	Right-handed alpha
Helix 18	18	A	615	648	Right-handed alpha
Helix 19	19	A	655	660	Right-handed alpha
Helix 20	20	A	673	679	Right-handed alpha
Helix 21	21	A	684	695	Right-handed alpha
Helix 22	22	A	705	714	Right-handed alpha
Helix 23	23	A	723	732	Right-handed alpha
Helix 24	24	A	759	771	Right-handed alpha
Helix 25	25	A	774	783	Right-handed alpha
Helix 26	26	A	804	828	Right-handed alpha
Helix 27	27	B	51	67	Right-handed alpha
Helix 28	28	B	87	102	Right-handed alpha
Helix 29	29	B	111	125	Right-handed alpha
Helix 30	30	B	152	167	Right-handed alpha
Helix 31	31	B	182	194	Right-handed alpha
Helix 32	32	B	211	221	Right-handed alpha
Helix 33	33	B	231	244	Right-handed alpha
Helix 34	34	B	260	264	Right-handed alpha
Helix 35	35	B	266	270	Right-handed alpha
Helix 36	36	B	286	297	Right-handed alpha
Helix 37	37	B	317	336	Right-handed alpha
Helix 38	38	B	355	365	Right-handed alpha
Helix 39	39	B	462	474	Right-handed alpha
Helix 40	40	B	500	506	Right-handed alpha
Helix 41	41	B	521	524	Right-handed alpha
Helix 42	42	B	554	556	Right-handed alpha
Helix 43	43	B	561	582	Right-handed alpha
Helix 44	44	B	631	661	Right-handed alpha
Helix 45	45	B	671	676	Right-handed alpha
Helix 46	46	B	689	695	Right-handed alpha
Helix 47	47	B	700	711	Right-handed alpha
Helix 48	48	B	721	730	Right-handed alpha
Helix 49	49	B	739	747	Right-handed alpha
Helix 50	50	B	774	787	Right-handed alpha
Helix 51	51	B	790	799	Right-handed alpha
Helix 52	52	B	819	844	Right-handed alpha
Helix 53	53	C	39	54	Right-handed alpha
Helix 54	54	C	74	89	Right-handed alpha
Helix 55	55	C	99	114	Right-handed alpha
Helix 56	56	C	141	156	Right-handed alpha
Helix 57	57	C	168	173	Right-handed alpha
Helix 58	58	C	175	179	Right-handed alpha
Helix 59	59	C	199	209	Right-handed alpha
Helix 60	60	C	219	233	Right-handed alpha
Helix 61	61	C	276	290	Right-handed alpha
Helix 62	62	C	301	323	Right-handed alpha
Helix 63	63	C	342	352	Right-handed alpha
Helix 64	64	C	439	441	Right-handed alpha
Helix 65	65	C	446	458	Right-handed alpha
Helix 66	66	C	483	490	Right-handed alpha
Helix 67	67	C	504	507	Right-handed alpha
Helix 68	68	C	537	539	Right-handed alpha
Helix 69	69	C	544	565	Right-handed alpha
Helix 70	70	C	615	648	Right-handed alpha
Helix 71	71	C	655	660	Right-handed alpha
Helix 72	72	C	673	679	Right-handed alpha
Helix 73	73	C	684	695	Right-handed alpha
Helix 74	74	C	705	714	Right-handed alpha
Helix 75	75	C	723	732	Right-handed alpha
Helix 76	76	C	759	771	Right-handed alpha
Helix 77	77	C	774	783	Right-handed alpha
Helix 78	78	C	804	828	Right-handed alpha
Helix 79	79	D	51	67	Right-handed alpha
Helix 80	80	D	87	102	Right-handed alpha
Helix 81	81	D	111	125	Right-handed alpha
Helix 82	82	D	152	167	Right-handed alpha
Helix 83	83	D	182	194	Right-handed alpha
Helix 84	84	D	211	221	Right-handed alpha
Helix 85	85	D	231	244	Right-handed alpha
Helix 86	86	D	260	264	Right-handed alpha
Helix 87	87	D	266	270	Right-handed alpha
Helix 88	88	D	286	297	Right-handed alpha
Helix 89	89	D	317	336	Right-handed alpha
Helix 90	90	D	355	365	Right-handed alpha
Helix 91	91	D	462	474	Right-handed alpha
Helix 92	92	D	500	506	Right-handed alpha
Helix 93	93	D	521	524	Right-handed alpha
Helix 94	94	D	554	556	Right-handed alpha
Helix 95	95	D	561	582	Right-handed alpha
Helix 96	96	D	631	661	Right-handed alpha
Helix 97	97	D	671	676	Right-handed alpha
Helix 98	98	D	689	695	Right-handed alpha
Helix 99	99	D	700	711	Right-handed alpha
Helix 100	100	D	721	730	Right-handed alpha
Helix 101	101	D	739	747	Right-handed alpha
Helix 102	102	D	774	787	Right-handed alpha
Helix 103	103	D	790	799	Right-handed alpha
Helix 104	104	D	819	844	Right-handed alpha

There are 24 sheets in PDB entry 7KS0. Click on sheet of interest to get list of strands forming it: A1, A2, A3, A4, A5, A6, B1, B2, B3, B4, B5, B6, C1, C2, C3, C4, C5, C6, D1, D2, D3, D4, D5, D6,

There are 5 strands in A1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	69	first strand
Strand 2	A	24	30	parallel
Strand 3	A	93	94	parallel
Strand 4	A	117	119	parallel
Strand 5	A	135	137	parallel

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There are 7 strands in A2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	192	first strand
Strand 2	A	161	165	parallel
Strand 3	A	213	217	parallel
Strand 4	A	241	244	parallel
Strand 5	A	263	268	parallel
Strand 6	A	375	380	anti-parallel
Strand 7	A	385	391	anti-parallel

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There are 2 strands in A3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	360	362	anti-parallel

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There are 6 strands in A4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	466	first strand
Strand 2	A	416	421	parallel
Strand 3	A	495	501	parallel
Strand 4	A	746	753	anti-parallel
Strand 5	A	510	512	anti-parallel
Strand 6	A	517	519	anti-parallel

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There are 2 strands in A5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

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There are 4 strands in A6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	A	717	722	parallel
Strand 3	A	521	526	anti-parallel
Strand 4	A	736	739	anti-parallel

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There are 5 strands in B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	83	first strand
Strand 2	B	34	43	parallel
Strand 3	B	106	107	parallel
Strand 4	B	129	131	parallel
Strand 5	B	146	148	parallel

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There are 8 strands in B2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	171	177	parallel
Strand 3	B	225	229	parallel
Strand 4	B	253	256	parallel
Strand 5	B	275	280	parallel
Strand 6	B	389	395	anti-parallel
Strand 7	B	398	406	anti-parallel
Strand 8	B	410	413	anti-parallel

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There are 2 strands in B3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	370	first strand
Strand 2	B	373	376	anti-parallel

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There are 6 strands in B4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	482	first strand
Strand 2	B	433	437	parallel
Strand 3	B	512	518	parallel
Strand 4	B	762	769	anti-parallel
Strand 5	B	527	529	anti-parallel
Strand 6	B	534	536	anti-parallel

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There are 2 strands in B5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 4 strands in B6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	733	738	parallel
Strand 3	B	538	543	anti-parallel
Strand 4	B	752	755	anti-parallel

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There are 5 strands in C1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	69	first strand
Strand 2	C	24	30	parallel
Strand 3	C	93	94	parallel
Strand 4	C	117	119	parallel
Strand 5	C	135	137	parallel

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There are 7 strands in C2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	192	first strand
Strand 2	C	161	165	parallel
Strand 3	C	213	217	parallel
Strand 4	C	241	244	parallel
Strand 5	C	263	268	parallel
Strand 6	C	375	380	anti-parallel
Strand 7	C	385	391	anti-parallel

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There are 2 strands in C3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	360	362	anti-parallel

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There are 6 strands in C4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	466	first strand
Strand 2	C	416	421	parallel
Strand 3	C	495	501	parallel
Strand 4	C	746	753	anti-parallel
Strand 5	C	510	512	anti-parallel
Strand 6	C	517	519	anti-parallel

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There are 2 strands in C5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	443	444	anti-parallel

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There are 4 strands in C6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	667	first strand
Strand 2	C	717	722	parallel
Strand 3	C	521	526	anti-parallel
Strand 4	C	736	739	anti-parallel

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There are 5 strands in D1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	83	first strand
Strand 2	D	34	43	parallel
Strand 3	D	106	107	parallel
Strand 4	D	129	131	parallel
Strand 5	D	146	148	parallel

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There are 8 strands in D2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	204	first strand
Strand 2	D	171	177	parallel
Strand 3	D	225	229	parallel
Strand 4	D	253	256	parallel
Strand 5	D	275	280	parallel
Strand 6	D	389	395	anti-parallel
Strand 7	D	398	406	anti-parallel
Strand 8	D	410	413	anti-parallel

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There are 2 strands in D3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	370	first strand
Strand 2	D	373	376	anti-parallel

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There are 6 strands in D4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	482	first strand
Strand 2	D	433	437	parallel
Strand 3	D	512	518	parallel
Strand 4	D	762	769	anti-parallel
Strand 5	D	527	529	anti-parallel
Strand 6	D	534	536	anti-parallel

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There are 2 strands in D5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 4 strands in D6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	733	738	parallel
Strand 3	D	538	543	anti-parallel
Strand 4	D	752	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KS0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KS0