Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KSE entry

There is 1 chain in PDB entry 7KSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ASN 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7KSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
107 118Right-handed alpha
Helix 3
AA3
A
122 133Right-handed alpha
Helix 4
AA4
A
134 135Right-handed 310
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
173 175Right-handed 310
Helix 7
AA7
A
176 190Right-handed alpha
Helix 8
AA8
A
222 227Right-handed alpha
Helix 9
AA9
A
236 244Right-handed alpha
Helix 10
AB1
A
257 262Right-handed 310
Helix 11
AB2
A
265 273Right-handed 310
Helix 12
AB3
A
292 305Right-handed alpha
Helix 13
AB4
A
324 343Right-handed alpha
Helix 14
AB5
A
388 400Right-handed alpha
Helix 15
AB6
A
401 405Right-handed 310
Helix 16
AB7
A
409 418Right-handed alpha
Helix 17
AB8
A
431 446Right-handed alpha
Helix 18
AB9
A
494 498Right-handed 310
Helix 19
AC1
A
499 519Right-handed alpha
Helix 20
AC2
A
547 556Right-handed alpha
Helix 21
AC3
A
557 560Right-handed 310
Helix 22
AC4
A
643 658Right-handed alpha
Helix 23
AC5
A
672 679Right-handed alpha
Helix 24
AC6
A
682 688Right-handed alpha
Helix 25
AC7
A
705 715Right-handed alpha
Helix 26
AC8
A
734 751Right-handed alpha
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There are 8 sheets in PDB entry 7KSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
85 87parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
71 80parallel
Strand 3
A
57 68anti-parallel
Strand 4
A
46 50anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
274 276anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
214 218anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 314first strand
Strand 2
A
317 322anti-parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
346 355anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
580 581anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 488first strand
Strand 2
A
471 477anti-parallel
Strand 3
A
460 466anti-parallel
Strand 4
A
524 528parallel
Strand 5
A
564 567parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 640first strand
Strand 2
A
614 625anti-parallel
Strand 3
A
596 606anti-parallel
Strand 4
A
666 670parallel
Strand 5
A
718 722parallel
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