Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KSF entry

There is 1 chain in PDB entry 7KSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ASN 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7KSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 39Right-handed 310
Helix 2
AA2
A
107 119Right-handed alpha
Helix 3
AA3
A
122 136Right-handed alpha
Helix 4
AA4
A
176 190Right-handed alpha
Helix 5
AA5
A
220 225Right-handed alpha
Helix 6
AA6
A
236 244Right-handed alpha
Helix 7
AA7
A
257 261Right-handed 310
Helix 8
AA8
A
265 273Right-handed 310
Helix 9
AA9
A
292 306Right-handed alpha
Helix 10
AB1
A
324 343Right-handed alpha
Helix 11
AB2
A
388 399Right-handed alpha
Helix 12
AB3
A
400 405Right-handed 310
Helix 13
AB4
A
406 407Right-handed 310
Helix 14
AB5
A
408 413Right-handed alpha
Helix 15
AB6
A
413 424Right-handed alpha
Helix 16
AB7
A
431 447Right-handed alpha
Helix 17
AB8
A
494 498Right-handed 310
Helix 18
AB9
A
499 520Right-handed alpha
Helix 19
AC1
A
532 538Right-handed alpha
Helix 20
AC2
A
540 544Right-handed 310
Helix 21
AC3
A
547 556Right-handed alpha
Helix 22
AC4
A
643 661Right-handed alpha
Helix 23
AC5
A
672 681Right-handed alpha
Helix 24
AC6
A
681 690Right-handed alpha
Helix 25
AC7
A
699 715Right-handed alpha
Helix 26
AC8
A
732 751Right-handed alpha
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There are 8 sheets in PDB entry 7KSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
71 80parallel
Strand 3
A
58 68anti-parallel
Strand 4
A
46 49anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
71 80parallel
Strand 3
A
58 68anti-parallel
Strand 4
A
12 15anti-parallel
Strand 5
A
20 25anti-parallel
Strand 6
A
85 87parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
274 276anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
214 218anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
317 322anti-parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
346 355anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
580 581anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 490first strand
Strand 2
A
470 477anti-parallel
Strand 3
A
460 466anti-parallel
Strand 4
A
524 528parallel
Strand 5
A
563 567parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 640first strand
Strand 2
A
616 624anti-parallel
Strand 3
A
596 603anti-parallel
Strand 4
A
666 670parallel
Strand 5
A
718 722parallel
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