Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KSK entry

There is 1 chain in PDB entry 7KSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 45ASN 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7KSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 116Right-handed alpha
Helix 2
AA2
A
153 158Right-handed alpha
Helix 3
AA3
A
162 183Right-handed alpha
Helix 4
AA4
A
191 193Right-handed 310
Helix 5
AA5
A
231 237Right-handed alpha
Helix 6
AA6
A
243 259Right-handed alpha
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
283 288Right-handed alpha
Helix 9
AA9
A
291 300Right-handed alpha
Helix 10
AB1
A
308 313Right-handed alpha
Helix 11
AB2
A
314 318Right-handed 310
Helix 12
AB3
A
322 340Right-handed alpha
Helix 13
AB4
A
349 355Right-handed alpha
Helix 14
AB5
A
386 399Right-handed alpha
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There are 3 sheets in PDB entry 7KSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
57 61anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 71first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
141 147anti-parallel
Strand 5
A
128 130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
203 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il