Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KSL entry

There are 5 chains in PDB entry 7KSL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PHE 421	PHE 947
B	PHE 421	PHE 947
A	PHE 421	PHE 947
F	PHE 421	PHE 947
E	PHE 421	PHE 947

There are109 helices in PDB entry 7KSL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	421	428	Right-handed alpha
Helix 2	AA2	C	431	447	Right-handed alpha
Helix 3	AA3	C	452	468	Right-handed alpha
Helix 4	AA4	C	479	489	Right-handed alpha
Helix 5	AA5	C	494	511	Right-handed alpha
Helix 6	AA6	C	528	541	Right-handed alpha
Helix 7	AA7	C	557	558	Right-handed 310
Helix 8	AA8	C	571	571	Right-handed 310
Helix 9	AA9	C	572	581	Right-handed alpha
Helix 10	AB1	C	604	611	Right-handed alpha
Helix 11	AB2	C	612	617	Right-handed alpha
Helix 12	AB3	C	646	651	Right-handed alpha
Helix 13	AB4	C	662	673	Right-handed alpha
Helix 14	AB5	C	673	683	Right-handed alpha
Helix 15	AB6	C	693	703	Right-handed alpha
Helix 16	AB7	C	709	729	Right-handed alpha
Helix 17	AB8	C	741	746	Right-handed alpha
Helix 18	AB9	C	807	829	Right-handed alpha
Helix 19	AC1	C	852	855	Right-handed 310
Helix 20	AC2	C	856	870	Right-handed alpha
Helix 21	AC3	C	894	905	Right-handed alpha
Helix 22	AC4	C	916	921	Right-handed alpha
Helix 23	AC5	C	924	929	Right-handed alpha
Helix 24	AC6	C	938	946	Right-handed alpha
Helix 25	AC7	B	422	428	Right-handed alpha
Helix 26	AC8	B	431	448	Right-handed alpha
Helix 27	AC9	B	452	468	Right-handed alpha
Helix 28	AD1	B	479	488	Right-handed alpha
Helix 29	AD2	B	494	511	Right-handed alpha
Helix 30	AD3	B	528	541	Right-handed alpha
Helix 31	AD4	B	572	581	Right-handed alpha
Helix 32	AD5	B	592	595	Right-handed 310
Helix 33	AD6	B	604	611	Right-handed alpha
Helix 34	AD7	B	641	645	Right-handed 310
Helix 35	AD8	B	646	651	Right-handed alpha
Helix 36	AD9	B	662	673	Right-handed alpha
Helix 37	AE1	B	673	683	Right-handed alpha
Helix 38	AE2	B	692	703	Right-handed alpha
Helix 39	AE3	B	709	729	Right-handed alpha
Helix 40	AE4	B	742	747	Right-handed alpha
Helix 41	AE5	B	807	829	Right-handed alpha
Helix 42	AE6	B	852	855	Right-handed 310
Helix 43	AE7	B	856	870	Right-handed alpha
Helix 44	AE8	B	894	904	Right-handed alpha
Helix 45	AE9	B	916	921	Right-handed alpha
Helix 46	AF1	B	938	947	Right-handed alpha
Helix 47	AF2	A	422	428	Right-handed alpha
Helix 48	AF3	A	431	448	Right-handed alpha
Helix 49	AF4	A	452	468	Right-handed alpha
Helix 50	AF5	A	479	489	Right-handed alpha
Helix 51	AF6	A	494	511	Right-handed alpha
Helix 52	AF7	A	528	541	Right-handed alpha
Helix 53	AF8	A	555	560	Right-handed alpha
Helix 54	AF9	A	572	581	Right-handed alpha
Helix 55	AG1	A	591	595	Right-handed 310
Helix 56	AG2	A	604	611	Right-handed alpha
Helix 57	AG3	A	641	645	Right-handed 310
Helix 58	AG4	A	646	652	Right-handed alpha
Helix 59	AG5	A	662	682	Right-handed alpha
Helix 60	AG6	A	692	703	Right-handed alpha
Helix 61	AG7	A	709	729	Right-handed alpha
Helix 62	AG8	A	807	829	Right-handed alpha
Helix 63	AG9	A	852	855	Right-handed 310
Helix 64	AH1	A	856	870	Right-handed alpha
Helix 65	AH2	A	894	905	Right-handed alpha
Helix 66	AH3	A	938	946	Right-handed alpha
Helix 67	AH4	F	421	428	Right-handed 310
Helix 68	AH5	F	431	447	Right-handed alpha
Helix 69	AH6	F	452	467	Right-handed alpha
Helix 70	AH7	F	479	489	Right-handed alpha
Helix 71	AH8	F	494	511	Right-handed alpha
Helix 72	AH9	F	530	541	Right-handed alpha
Helix 73	AI1	F	555	560	Right-handed alpha
Helix 74	AI2	F	571	581	Right-handed alpha
Helix 75	AI3	F	604	611	Right-handed alpha
Helix 76	AI4	F	612	616	Right-handed 310
Helix 77	AI5	F	646	653	Right-handed alpha
Helix 78	AI6	F	662	673	Right-handed alpha
Helix 79	AI7	F	673	683	Right-handed alpha
Helix 80	AI8	F	692	704	Right-handed alpha
Helix 81	AI9	F	709	729	Right-handed alpha
Helix 82	AJ1	F	741	746	Right-handed alpha
Helix 83	AJ2	F	807	829	Right-handed alpha
Helix 84	AJ3	F	852	855	Right-handed 310
Helix 85	AJ4	F	856	870	Right-handed alpha
Helix 86	AJ5	F	894	905	Right-handed alpha
Helix 87	AJ6	F	916	921	Right-handed alpha
Helix 88	AJ7	F	938	947	Right-handed alpha
Helix 89	AJ8	E	422	426	Right-handed alpha
Helix 90	AJ9	E	431	447	Right-handed alpha
Helix 91	AK1	E	452	468	Right-handed alpha
Helix 92	AK2	E	479	490	Right-handed alpha
Helix 93	AK3	E	494	510	Right-handed alpha
Helix 94	AK4	E	528	540	Right-handed alpha
Helix 95	AK5	E	572	581	Right-handed alpha
Helix 96	AK6	E	603	611	Right-handed alpha
Helix 97	AK7	E	646	651	Right-handed alpha
Helix 98	AK8	E	662	673	Right-handed alpha
Helix 99	AK9	E	673	682	Right-handed alpha
Helix 100	AL1	E	692	703	Right-handed alpha
Helix 101	AL2	E	709	729	Right-handed alpha
Helix 102	AL3	E	807	827	Right-handed alpha
Helix 103	AL4	E	852	855	Right-handed 310
Helix 104	AL5	E	856	870	Right-handed alpha
Helix 105	AL6	E	895	906	Right-handed alpha
Helix 106	AL7	E	913	915	Right-handed 310
Helix 107	AL8	E	916	922	Right-handed alpha
Helix 108	AL9	E	925	929	Right-handed 310
Helix 109	AM1	E	938	947	Right-handed alpha

There are 23 sheets in PDB entry 7KSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	636	638	parallel
Strand 3	C	519	522	parallel
Strand 4	C	654	657	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	764	771	first strand
Strand 2	C	774	784	anti-parallel
Strand 3	C	840	843	anti-parallel
Strand 4	C	800	803	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	877	879	first strand
Strand 2	C	909	913	parallel
Strand 3	C	932	936	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	548	first strand
Strand 2	B	587	590	parallel
Strand 3	B	635	639	parallel
Strand 4	B	518	522	parallel
Strand 5	B	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	690	first strand
Strand 2	B	735	736	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	771	first strand
Strand 2	B	774	784	anti-parallel
Strand 3	B	839	843	anti-parallel
Strand 4	B	799	803	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	883	first strand
Strand 2	B	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	932	936	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	587	590	parallel
Strand 3	A	636	639	parallel
Strand 4	A	519	522	parallel
Strand 5	A	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	735	737	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	803	first strand
Strand 2	A	839	843	parallel
Strand 3	A	778	784	anti-parallel
Strand 4	A	764	767	anti-parallel
Strand 5	A	877	879	parallel
Strand 6	A	909	913	parallel
Strand 7	A	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	774	775	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	883	first strand
Strand 2	A	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	545	548	first strand
Strand 2	F	587	590	parallel
Strand 3	F	635	639	parallel
Strand 4	F	518	522	parallel
Strand 5	F	655	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	689	691	first strand
Strand 2	F	735	737	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	764	766	first strand
Strand 2	F	779	782	anti-parallel
Strand 3	F	839	843	anti-parallel
Strand 4	F	799	803	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	769	771	first strand
Strand 2	F	774	776	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	877	879	first strand
Strand 2	F	909	913	parallel
Strand 3	F	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	883	first strand
Strand 2	F	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	546	548	first strand
Strand 2	E	587	590	parallel
Strand 3	E	635	639	parallel
Strand 4	E	521	522	parallel
Strand 5	E	656	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	689	691	first strand
Strand 2	E	735	737	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	765	771	first strand
Strand 2	E	774	784	anti-parallel
Strand 3	E	839	843	anti-parallel
Strand 4	E	799	803	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	877	879	first strand
Strand 2	E	909	911	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KSL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSL