Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KSM entry

There are 7 chains in PDB entry 7KSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 416	PHE 947
B	LYS 420	PHE 947
C	ALA 416	PHE 947
D	ILE 417	PHE 947
E	ILE 417	PHE 947
F	GLU 419	PHE 947
G	UNK 1	UNK 12

There are135 helices in PDB entry 7KSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	416	426	Right-handed alpha
Helix 2	AA2	A	431	447	Right-handed alpha
Helix 3	AA3	A	452	468	Right-handed alpha
Helix 4	AA4	A	479	491	Right-handed alpha
Helix 5	AA5	A	494	512	Right-handed alpha
Helix 6	AA6	A	530	540	Right-handed alpha
Helix 7	AA7	A	554	558	Right-handed 310
Helix 8	AA8	A	571	579	Right-handed alpha
Helix 9	AA9	A	604	612	Right-handed alpha
Helix 10	AB1	A	615	619	Right-handed 310
Helix 11	AB2	A	646	651	Right-handed alpha
Helix 12	AB3	A	662	673	Right-handed alpha
Helix 13	AB4	A	673	683	Right-handed alpha
Helix 14	AB5	A	692	703	Right-handed alpha
Helix 15	AB6	A	709	730	Right-handed alpha
Helix 16	AB7	A	742	747	Right-handed alpha
Helix 17	AB8	A	807	828	Right-handed alpha
Helix 18	AB9	A	852	855	Right-handed 310
Helix 19	AC1	A	856	870	Right-handed alpha
Helix 20	AC2	A	894	905	Right-handed alpha
Helix 21	AC3	A	916	922	Right-handed alpha
Helix 22	AC4	A	938	947	Right-handed alpha
Helix 23	AC5	B	422	427	Right-handed alpha
Helix 24	AC6	B	431	447	Right-handed alpha
Helix 25	AC7	B	452	468	Right-handed alpha
Helix 26	AC8	B	479	491	Right-handed alpha
Helix 27	AC9	B	494	511	Right-handed alpha
Helix 28	AD1	B	531	541	Right-handed alpha
Helix 29	AD2	B	555	560	Right-handed alpha
Helix 30	AD3	B	571	581	Right-handed alpha
Helix 31	AD4	B	602	611	Right-handed alpha
Helix 32	AD5	B	646	651	Right-handed alpha
Helix 33	AD6	B	662	673	Right-handed alpha
Helix 34	AD7	B	673	683	Right-handed alpha
Helix 35	AD8	B	692	703	Right-handed alpha
Helix 36	AD9	B	709	729	Right-handed alpha
Helix 37	AE1	B	742	747	Right-handed alpha
Helix 38	AE2	B	807	829	Right-handed alpha
Helix 39	AE3	B	833	838	Right-handed alpha
Helix 40	AE4	B	849	855	Right-handed 310
Helix 41	AE5	B	856	870	Right-handed alpha
Helix 42	AE6	B	894	905	Right-handed alpha
Helix 43	AE7	B	916	921	Right-handed alpha
Helix 44	AE8	B	938	946	Right-handed alpha
Helix 45	AE9	C	417	428	Right-handed alpha
Helix 46	AF1	C	431	447	Right-handed alpha
Helix 47	AF2	C	452	468	Right-handed alpha
Helix 48	AF3	C	479	489	Right-handed alpha
Helix 49	AF4	C	494	511	Right-handed alpha
Helix 50	AF5	C	530	541	Right-handed alpha
Helix 51	AF6	C	555	560	Right-handed alpha
Helix 52	AF7	C	571	581	Right-handed alpha
Helix 53	AF8	C	602	611	Right-handed alpha
Helix 54	AF9	C	615	619	Right-handed 310
Helix 55	AG1	C	646	653	Right-handed alpha
Helix 56	AG2	C	662	673	Right-handed alpha
Helix 57	AG3	C	673	683	Right-handed alpha
Helix 58	AG4	C	692	704	Right-handed alpha
Helix 59	AG5	C	709	729	Right-handed alpha
Helix 60	AG6	C	741	747	Right-handed alpha
Helix 61	AG7	C	807	825	Right-handed alpha
Helix 62	AG8	C	852	855	Right-handed 310
Helix 63	AG9	C	856	870	Right-handed alpha
Helix 64	AH1	C	894	905	Right-handed alpha
Helix 65	AH2	C	916	922	Right-handed alpha
Helix 66	AH3	C	938	947	Right-handed alpha
Helix 67	AH4	D	418	427	Right-handed alpha
Helix 68	AH5	D	431	448	Right-handed alpha
Helix 69	AH6	D	452	467	Right-handed alpha
Helix 70	AH7	D	479	491	Right-handed alpha
Helix 71	AH8	D	494	512	Right-handed alpha
Helix 72	AH9	D	531	541	Right-handed alpha
Helix 73	AI1	D	555	560	Right-handed alpha
Helix 74	AI2	D	572	581	Right-handed alpha
Helix 75	AI3	D	591	595	Right-handed 310
Helix 76	AI4	D	602	611	Right-handed alpha
Helix 77	AI5	D	641	645	Right-handed 310
Helix 78	AI6	D	646	653	Right-handed alpha
Helix 79	AI7	D	662	673	Right-handed alpha
Helix 80	AI8	D	673	683	Right-handed alpha
Helix 81	AI9	D	692	704	Right-handed alpha
Helix 82	AJ1	D	709	729	Right-handed alpha
Helix 83	AJ2	D	740	745	Right-handed 310
Helix 84	AJ3	D	807	829	Right-handed alpha
Helix 85	AJ4	D	833	838	Right-handed alpha
Helix 86	AJ5	D	853	855	Right-handed 310
Helix 87	AJ6	D	856	870	Right-handed alpha
Helix 88	AJ7	D	894	905	Right-handed alpha
Helix 89	AJ8	D	916	922	Right-handed alpha
Helix 90	AJ9	D	938	947	Right-handed alpha
Helix 91	AK1	E	418	425	Right-handed alpha
Helix 92	AK2	E	431	448	Right-handed alpha
Helix 93	AK3	E	452	467	Right-handed alpha
Helix 94	AK4	E	479	491	Right-handed alpha
Helix 95	AK5	E	494	511	Right-handed alpha
Helix 96	AK6	E	528	541	Right-handed alpha
Helix 97	AK7	E	555	560	Right-handed alpha
Helix 98	AK8	E	572	581	Right-handed alpha
Helix 99	AK9	E	591	595	Right-handed 310
Helix 100	AL1	E	603	611	Right-handed alpha
Helix 101	AL2	E	646	653	Right-handed alpha
Helix 102	AL3	E	662	673	Right-handed alpha
Helix 103	AL4	E	673	683	Right-handed alpha
Helix 104	AL5	E	692	703	Right-handed alpha
Helix 105	AL6	E	709	730	Right-handed alpha
Helix 106	AL7	E	742	747	Right-handed alpha
Helix 107	AL8	E	807	828	Right-handed alpha
Helix 108	AL9	E	852	855	Right-handed 310
Helix 109	AM1	E	856	870	Right-handed alpha
Helix 110	AM2	E	894	905	Right-handed alpha
Helix 111	AM3	E	916	921	Right-handed alpha
Helix 112	AM4	E	938	947	Right-handed alpha
Helix 113	AM5	F	420	428	Right-handed alpha
Helix 114	AM6	F	431	447	Right-handed alpha
Helix 115	AM7	F	452	468	Right-handed alpha
Helix 116	AM8	F	479	491	Right-handed alpha
Helix 117	AM9	F	494	512	Right-handed alpha
Helix 118	AN1	F	530	541	Right-handed alpha
Helix 119	AN2	F	571	581	Right-handed alpha
Helix 120	AN3	F	591	595	Right-handed 310
Helix 121	AN4	F	604	612	Right-handed alpha
Helix 122	AN5	F	612	617	Right-handed alpha
Helix 123	AN6	F	646	651	Right-handed alpha
Helix 124	AN7	F	662	673	Right-handed alpha
Helix 125	AN8	F	673	682	Right-handed alpha
Helix 126	AN9	F	692	703	Right-handed alpha
Helix 127	AO1	F	709	729	Right-handed alpha
Helix 128	AO2	F	741	745	Right-handed 310
Helix 129	AO3	F	807	829	Right-handed alpha
Helix 130	AO4	F	833	838	Right-handed alpha
Helix 131	AO5	F	852	855	Right-handed 310
Helix 132	AO6	F	856	869	Right-handed alpha
Helix 133	AO7	F	894	905	Right-handed alpha
Helix 134	AO8	F	916	922	Right-handed alpha
Helix 135	AO9	F	938	947	Right-handed alpha

There are 28 sheets in PDB entry 7KSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	586	589	parallel
Strand 3	A	635	639	parallel
Strand 4	A	519	522	parallel
Strand 5	A	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	690	first strand
Strand 2	A	735	736	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	771	first strand
Strand 2	A	774	782	anti-parallel
Strand 3	A	842	843	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	879	first strand
Strand 2	A	909	913	parallel
Strand 3	A	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	883	first strand
Strand 2	A	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	586	589	parallel
Strand 3	B	634	639	parallel
Strand 4	B	518	522	parallel
Strand 5	B	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	690	first strand
Strand 2	B	735	736	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	769	first strand
Strand 2	B	776	784	anti-parallel
Strand 3	B	840	844	anti-parallel
Strand 4	B	800	804	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	879	first strand
Strand 2	B	909	913	parallel
Strand 3	B	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	883	first strand
Strand 2	B	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	543	548	first strand
Strand 2	C	585	590	parallel
Strand 3	C	634	639	parallel
Strand 4	C	517	522	parallel
Strand 5	C	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	689	690	first strand
Strand 2	C	735	736	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	767	first strand
Strand 2	C	778	782	anti-parallel
Strand 3	C	839	843	anti-parallel
Strand 4	C	799	803	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	877	879	first strand
Strand 2	C	909	913	parallel
Strand 3	C	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	883	first strand
Strand 2	C	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	548	first strand
Strand 2	D	585	590	parallel
Strand 3	D	634	639	parallel
Strand 4	D	518	522	parallel
Strand 5	D	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	690	first strand
Strand 2	D	735	736	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	769	first strand
Strand 2	D	776	784	anti-parallel
Strand 3	D	839	844	anti-parallel
Strand 4	D	799	804	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	877	879	first strand
Strand 2	D	909	913	parallel
Strand 3	D	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	882	883	first strand
Strand 2	D	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	545	548	first strand
Strand 2	E	587	590	parallel
Strand 3	E	635	639	parallel
Strand 4	E	518	522	parallel
Strand 5	E	654	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	689	691	first strand
Strand 2	E	735	737	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	799	802	first strand
Strand 2	E	839	843	parallel
Strand 3	E	774	784	anti-parallel
Strand 4	E	764	771	anti-parallel
Strand 5	E	877	879	parallel
Strand 6	E	909	913	parallel
Strand 7	E	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	882	883	first strand
Strand 2	E	889	890	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	544	548	first strand
Strand 2	F	586	590	parallel
Strand 3	F	634	639	parallel
Strand 4	F	518	522	parallel
Strand 5	F	653	657	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	689	691	first strand
Strand 2	F	735	737	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	799	803	first strand
Strand 2	F	839	843	parallel
Strand 3	F	775	784	anti-parallel
Strand 4	F	764	770	anti-parallel
Strand 5	F	877	879	parallel
Strand 6	F	909	913	parallel
Strand 7	F	932	936	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	883	first strand
Strand 2	F	889	890	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSM